Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00601 ATGTTACTCTCTTCACCTTCTCTCCAAAATCCTCTCCATTACTCCAATTCTTCCTCCCCCTTCTTCCCCTTCTTCTCCTTCAATGCCCTAAAACTCCATTCTTTCATTCGCCTCAAACCGCTCACCTTCAATTGCACTTCCTCCTCCCTTACTGACACATCCTCCATCCCAAACCCTAGCCTCAACCCCACTCTCCTCCGCCACGTTACTCATACTGTACGCGACAATGACGACGATGGGTCTATGGTACCTTCAGCATCTGCTGTCGCCTCCGCCATTCTCAAAGCTTCCACTTCTCCTGTGGAGTTTGTGCATAGGATCGAGAACAGCCAGAATACTGGGTTGGTGCTGCCGAGCCCTGACTTTCAGAGGCTTTGCATCGAGCAGTTGGATTTGTTTCGCCGGATCGTTGATCCTGATGCCCTCCTCTCGGTTTATGTAAGACCTGCTGGTAGCTATGTGATGGACCGTCTTGAGCTGCGTCGTGTTGCATCCTTCCCAGGGGTTAATGTTACTGACGTTGTGATATTGGTTGGAAATTTTAGCGTTCCAACTGGTTTACGTGCTGCAGAAGCCGCTTTTTCCAGTCAACAAGTTGAAGTTATCTCAGAGCACAAGGCTATAGTCTTTCCAATGGTGAAACACCCTTTTGTTGTGGGGTTCTTGGTTGCCGAGCTTCCAAACCTGGAAATGGAAAAATGCATGGATATGCAGAGTGCCGATCGCGATCTGTGGCCATACTCATCTCTGCACGAAGCTGGTGCTCTTGTAGCTGGCTCAGGAACAAGTACACAGGGAATCCAAAATACTATGAATGGATCATTGAGAACGTACAAATTTAATGCAGATCGGCAAGCAAATGCCTTCCATATTTCCCGTTCTCTTGCTATGGCATATGTTATGGATCAGAAAGCAATGTTGCTCCAGCAATCATCATGGCAGAATAATTTGAGGATGAGCAATCTGGTTGACCAAATTCGTGGTTCTCTTTCTAGCATCCAAAGTTTAAGTAAGATGTTATCTGTTCACATGAAGAAAAGCGAGGCAAATATAGTACACTATAACGAAGAAACACTAAAGAAAATGTACAGGCCTTCAAACCCTTTGTCTGAATCAGCGAGAAATCAGCTGGATAACCTTCCAACAGATGCTTCCAATGCTAGGATGCAAGGGGGGTTAGTTTTTTCTAACAATACAGTTAAGGACGTAGAGATGCCCATGCCACCTGCAGTACTTGCTCCTGTTCAACAACAAGAAATAAGGTCATGCAACGTTTCTGATGTTCTGATTGATTTGGTCGAGGCAGTGAAACCTCTAGCACGTAAACAGCAACGTATAGTAGAACTAAGTGAACAGGCTTGTTCTATGCAAGTTGCTGTGGAAGAATCTTCACTGCGTCAGGCTTTGAGCAATGTAATTGAAGGCGCACTATTACGTACGCGTGTTGGAGGAAAGGTAGAAATTATATCTACCACAGCACCAGCAGGTGGTGCGCTTATAGTTATAGATGACGATGGCCCTGATATGCACTATATGACGCAGATGCATTCACTCACACCATTTGGAGCAGATCTCTTGTCGAAGGAAAGGGTGGAAGACAACATGACCTGGAACTTTGTAGCAGGGCTGACTGTTGCTTGCGAAATACTTGAGAGTTATGGGTGTGTGGTGCGTGTCATATCACCCAGGTGCGCAGATGCAGCACTCGGATCTGGGGGAACTCGCTTGGAGCTCTGGCTCCCTTCCCCTCCAGGTATAACTCTGCACAACCTCGACATTCCAACTCAGGGTGCATAG 1797 46.58 MLLSSPSLQNPLHYSNSSSPFFPFFSFNALKLHSFIRLKPLTFNCTSSSLTDTSSIPNPSLNPTLLRHVTHTVRDNDDDGSMVPSASAVASAILKASTSPVEFVHRIENSQNTGLVLPSPDFQRLCIEQLDLFRRIVDPDALLSVYVRPAGSYVMDRLELRRVASFPGVNVTDVVILVGNFSVPTGLRAAEAAFSSQQVEVISEHKAIVFPMVKHPFVVGFLVAELPNLEMEKCMDMQSADRDLWPYSSLHEAGALVAGSGTSTQGIQNTMNGSLRTYKFNADRQANAFHISRSLAMAYVMDQKAMLLQQSSWQNNLRMSNLVDQIRGSLSSIQSLSKMLSVHMKKSEANIVHYNEETLKKMYRPSNPLSESARNQLDNLPTDASNARMQGGLVFSNNTVKDVEMPMPPAVLAPVQQQEIRSCNVSDVLIDLVEAVKPLARKQQRIVELSEQACSMQVAVEESSLRQALSNVIEGALLRTRVGGKVEIISTTAPAGGALIVIDDDGPDMHYMTQMHSLTPFGADLLSKERVEDNMTWNFVAGLTVACEILESYGCVVRVISPRCADAALGSGGTRLELWLPSPPGITLHNLDIPTQGA 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5549734 5553897 - Lsi04G006010.1 Lsi04g00601 660650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00601 598 CDD HATPase 465 580 - -
Lsi04g00601 598 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 419 562 IPR036890 -
Lsi04g00601 598 Gene3D - 410 582 IPR036890 -
Lsi04g00601 598 PANTHER CHLOROPLAST SENSOR KINASE, CHLOROPLASTIC 348 582 - -
Lsi04g00601 598 PANTHER CHLOROPLAST SENSOR KINASE, CHLOROPLASTIC 1 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00601 - - - bhj:120081830 1057.74
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g635 . . . . . . Bma14g01824 . . . . . . . Sed04g0579 . Cpe01g01573 Bhi07g01797 Tan04g0157 Cmetu10g0954 . Hepe10g1586 . . Cla05g02592 Cam05g2783 Cec05g2820 Cco05g2854 Clacu05g2785 Cmu05g2633 Cre05g2749 Cone13ag1082 Cone19ag1070 . . Lsi04g00601 Csa05g02282 Chy10g00848 Cme10g00582 . Blo11g01042 . . . . . . . . . Cma04g01776 . Car04g01801 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012057 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00601 Lsi_Chr04 FPKM 31.768328 35.50037 16.36072 20.176872 3.289862 4.078407 3.236537 0.0 0.0 0.0