Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00603 ATGAGTTTCACATCCATCCAAAATGCTTCTCCATACTGTAACTGCTTCACGAAATCCTCAAATCGCTATAATCCTCCTCCTACTATTGCATATCAATCGAAATGCGTGATTAGGAATAGGGAATTAATTTTCCCGTTCAAGTCTCTGAGATGCATTCGAGATTACGAATCTGAATCAATTTGGCGAATTCAAAAACTTAGGGCAATGAATCCTGTACTCGTTGCGGAGAAGCTTAAACGGCTGGTTGATGAATTCAAGTCCCTGAAAGAGCCGATTGATCGAGTGAAGAGGCTATTGCATTACGCTATGCTTCTTGCTCCAATGGATGATTCGGCTCGGGTGGATGGAAACAGAGTGGCGGGATGTACGACTGAGGTATGGTTGGAAGTGAAAATGGATGATGATGGAAGGATGAGATTCAAAGCGGACAGTGATTCAGAGATTACGAAGGGATTCTGTTCTTGCTTGATATGGTTGTTGGATGGGGCGGAGGCTGCGGAGGTTTTGGCGGTGGAGATTGAGGATTTGGAGGCTGTGAATTTGGGATTTCAAATGAAGGTGAGATCCAGAGTTAATACTTGGCAAAATGTGTTGATTAGTATGCAGAAAAGAACTAGTGATTTAGTTTCAGAATTAAATGGAGAATCGCCTTAG 654 42.66 MSFTSIQNASPYCNCFTKSSNRYNPPPTIAYQSKCVIRNRELIFPFKSLRCIRDYESESIWRIQKLRAMNPVLVAEKLKRLVDEFKSLKEPIDRVKRLLHYAMLLAPMDDSARVDGNRVAGCTTEVWLEVKMDDDGRMRFKADSDSEITKGFCSCLIWLLDGAEAAEVLAVEIEDLEAVNLGFQMKVRSRVNTWQNVLISMQKRTSDLVSELNGESP 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5566403 5567056 - Lsi04G006030.1 Lsi04g00603 660652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00603 217 Pfam Fe-S metabolism associated domain 83 203 IPR003808 -
Lsi04g00603 217 Gene3D - 62 206 - -
Lsi04g00603 217 PANTHER SUFE-LIKE PROTEIN 2, CHLOROPLASTIC 61 214 - -
Lsi04g00603 217 SUPERFAMILY SufE/NifU 76 210 - -
Lsi04g00603 217 PANTHER SULFUR ACCEPTOR PROTEIN CSDE 61 214 IPR003808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00603 - - K03517 cmax:111466428 291.197
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01798 Lsi-Chr2:23779868 Lsi04g00603 Lsi-Chr4:5566403 3.51E-14 dispersed
Lsi02g00425 Lsi-Chr2:3507075 Lsi04g00603 Lsi-Chr4:5566403 8.01E-59 wgd
Lsi04g00603 Lsi-Chr4:5566403 Lsi08g01638 Lsi-Chr8:24266170 3.17E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g627 . . . . . . Bma14g01826 Bma15g00223 . Cmo18g00761 . Cma18g00757 . Car18g00690 . Cpe09g00540 . . . . . . . . Cla05g02594 Cam05g2785 Cec05g2823 Cco05g2855 Clacu05g2787 Cmu05g2635 Cre05g2751 Cone13ag1085 . Cone8ag0698 . Lsi04g00603 . . . Blo06g00845 . Bda07g01641 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003471 2 1 1 5 2 2 2 1 2 1 2 2 1 1 0 1 2 2 1 2 1 1 2 2 1 2 1 1 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00603 Lsi_Chr04 FPKM 15.863248 18.352518 12.360771 13.239499 14.325111 9.865714 9.977152 13.842351 10.630378 10.113228