Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00604 ATGGTTGAGCTCAGGCACTCGAGCTCGCTTGGGAACAGAGCCACTTCTTCGCCAATGAAGCGGGACGAAGACTCGTCCCCTTTAGTCCCAGACCGCCAGTCTGAAGACCATGACGATCGTGATCGTCATTCGATCCGTGATCGCCCCTACTCTAGGCTCAGTTTTCAATCATTGTGTCCTTACTTTGGCGATGATTCTAGGGTTTCTCCTTATAACTCCAAGATCTCACTCTTCTTTGTCTTTCTAGTAGTTGCCGCTGGCTTGATCGCTGTTTTCTCCATTGTTAGACGTTTGAATTCCCCGTACTTGTGTGAAAAAGAGGGCATTACTCTTCATTGTCCGCCGGTTAAGGAACGTCCTTCACTCTGGGAGAATCCTTACTCAGCAACAATATCTTGGAAGCCTTGTGCTGAGCTTCGTGATTCTGAAATCTCAGATCTTCCTCCTGAAAATGAAACAAATGGCTATATATTCATCCATGCTGAAGGCGGTCTCAATCAGCAGAGAATTGCTATTTGCAATGCGGTTGCTGTGGCTAAAATACTAAATGCAACACTTATTTTGCCTGTTTTAAAGCAAGATCAGATCTGGAAGGACCAAACGAAATTTGAGGACATTTTTGACGTTGATCATTTCATTAATTATTTGAAGAATGATGTGCGAGTTGTTCGGGATATTCCTGATTGGTTTACAGACAAATCAGAGCTATTTACCAGTATAAGACGTACGGTCAAGAACATCCCAAAGTATGCACCAGCACAATTTTACATTGACAATGTACTTCCTCGAATCAAAGAGAAGAAGATAATGGCACTAAAACCTTTTGTTGATCGGCTTGGGTACGACAATGTTCCTTCAGAAATCAACAGGCTAAGGTGCAGAGTAAACTATCACGCTCTTAAATTTCTTCCTGACATAGAGCACATGGCTGATGTATTAGCTTCAAGGATGAGAAGTCGCACAAACAGTTCAAATCCATATATGGCTCTTCATCTGAGGTTTGAGAAAGGAATGGTTGGACTTTCATTTTGTGATTTTGTGGGGACAAGAGAGGAGAAAGTCAAAATGGCAGAATACAGAAAAAAAGAATGGCCACGTAGATATAAGAATGGTTCCCACCTATGGCAACTGGCCCTGCAGAAAAGAAAGGAAGGGCGGTGCCCTCTTGAGCCTGGAGAAGTAGCCGTAATTCTTAGAGCAATGGGCTATCCAAAGGAAACTCAAATTTATGTTGCATCCGGTCAGGTGTATGGCGGACAGAATAGGATGGCACCACTAAGGAACATGTTCCCGAATCTGGTGACGAAGGAAGAGTTAGCTACCAAGGAGGAGTTGGATAGCTTCAGGAAACATGTTACGAGTTTAGCAGCATTGGATTTCTTAGTATGCTTGAAATCTGACGTGTTTGTGATGACTCATGGAGGTAACTTCGCAAAGTTGATTATTGGGGCACGCAGATATTTAGGTCACCGTCTTAAATCCATAAAACCAGATAAAGGGCTAATGTCAAAATCTTTTGGAGACCCATACATGGGGTGGGCGCCTTTCGTAGAAGATGTCGTTGTCACCCACCAAACCCGAACCGGATTACCGGAAGAGACCTTCCCCAACTATGACCTTTGGGAGAATCCCCTCACCCCGTGCATGTGCAAAGCTTAA 1659 43.88 MVELRHSSSLGNRATSSPMKRDEDSSPLVPDRQSEDHDDRDRHSIRDRPYSRLSFQSLCPYFGDDSRVSPYNSKISLFFVFLVVAAGLIAVFSIVRRLNSPYLCEKEGITLHCPPVKERPSLWENPYSATISWKPCAELRDSEISDLPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKILNATLILPVLKQDQIWKDQTKFEDIFDVDHFINYLKNDVRVVRDIPDWFTDKSELFTSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPSEINRLRCRVNYHALKFLPDIEHMADVLASRMRSRTNSSNPYMALHLRFEKGMVGLSFCDFVGTREEKVKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELATKEELDSFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYLGHRLKSIKPDKGLMSKSFGDPYMGWAPFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMCKA 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5568864 5573860 - Lsi04G006040.1 Lsi04g00604 660653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00604 552 PANTHER O-FUCOSYLTRANSFERASE 2-RELATED 1 552 - -
Lsi04g00604 552 MobiDBLite consensus disorder prediction 17 46 - -
Lsi04g00604 552 MobiDBLite consensus disorder prediction 1 46 - -
Lsi04g00604 552 PIRSF UCP009360 41 552 IPR024709 -
Lsi04g00604 552 PANTHER PROTEIN PECTIC ARABINOGALACTAN SYNTHESIS-RELATED 1 552 - -
Lsi04g00604 552 CDD O-FucT_plant 156 491 IPR024709 -
Lsi04g00604 552 Gene3D - 295 495 - -
Lsi04g00604 552 Pfam GDP-fucose protein O-fucosyltransferase 156 488 IPR019378 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00604 - - - csv:101203125 1098.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00604 Lsi-Chr4:5568864 Lsi08g00026 Lsi-Chr8:676363 5.92E-105 dispersed
Lsi04g00604 Lsi-Chr4:5568864 Lsi01g00811 Lsi-Chr1:6430292 3.56E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g623 . . . . . . . Bma15g00224 . Cmo18g00760 . Cma18g00756 . Car18g00689 . Cpe09g00541 . Bhi07g01801 . . . . . . Cla05g02595 Cam05g2786 Cec05g2824 Cco05g2856 Clacu05g2788 Cmu05g2636 Cre05g2752 Cone13ag1088 Cone19ag1077 . . Lsi04g00604 Csa05g02280 Chy10g00846 Cme10g00584 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009709 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00604 Lsi_Chr04 FPKM 10.203449 10.156814 10.458373 11.786534 8.653452 7.57132 9.341239 13.022579 12.284192 14.416721