Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00605 ATGAACTCGTTGGCGCGGAACGTATCATGCTTCATCAGGTCTTCGATTCACACCACTGACTCGTTACATTGCCAGCAGCAGCAATGGAGGGGGATCCGAGTGAAGGTATTGAACGGGAATCTAGAGCGGGCACTGGCAATTTTGCAAAGGAAGATGCAATCGAGCGGAATCGAGCGGCTGATTAAGCGCGAACAGACACATCACATCAAGAATTCCGAAAAACGAGTTTTGGCACGAAAGAATTTGGAGCGCAAAGTTCGATCGAAGGAACTTGCTCGCACGCTCAAATCCATCCTTATAAAGAAAGTCAGTTCTACGTTCTTCGCCGCCATTTTCCCTCCTCTCTGCTGCATGATGGAGGCTGTGAGACTGCGAGTTCTGTTCAAAGACAAGGACCTACTCACCGAGTCGCTCACAGGGTTGAGCCGGAGCTGGATTGTCCTAAAACCTCATCTCCGAACTATTTCCGACCTATCCTCCTACATCCTTTCTGTTTTCCGTCTTCAAGATGCTTGCCCCAACGGTCTCATCCTTTCTATGGATGGCTTTGTGTTACCACCATTTGAGTCGGTGTGTATCTTGAAGGATAAGGACATTGTCAGAGTGAAGAAGAAAAAAAGTAAGGCAATCAGTCTCAATGATGGTAACAGATTGATCGAAACTGAGGAATTCAGGGAAAGGAAACCTGTTGACAAAGGAGTGAAGCTTCTGGCTGACAAGGAGTTTGAAAATGAATCTAATGGCTATGAGAGTGAATCAGAGGAAGATGAACCTAATGCTACTTTGCCAGTGAAAGCTGCGCCAATAGAAAAAAGAGTGTCCAAGAAAAGAAAAGCTTCAAAGATAATTCGCAACTCGAAGAGGAAGAAAAATAAATCTTCCCTTACTGAAGAATTTCCAACTATCGTAGCAGATGTTCAGCATGCCAATGAAAAACATGAAGAAAGAAATCATCTGAAGTCCGACCACCCACAAAAGGTTCTAGTAAGCAAAAATGATTCATCCAGCAGTTCTAGTAAATGTGAATCAGATACATCCAGCAGCATTGAAAATGATGGAAGAAGCAACAATATTGTTAAGTCAACTGCTATTGCAGAGAGGGCTGATCAGCTTGGAGCTGGCGGGAAACATGTTGAGTTGTCTGACACAGCTGGTGAAAGTAAAAAGGGTCCTAGTAGAAGTACTCGCCGTAAGAAGGCAAAAAGGCGTTGGTTGAGGGAAAGAGCTCAAAATGAAGAGCAACAGCAGAAGGTATTTGAAACAAGTTTAGATCAAGGACCTAGTCAAAATGATGATGTTGATATGGATGATGACACTGTTCCCGTGGTAGTTAAGCCAGGACACATTCGCTTTGAGCCAGTTGGAAAAGTTGTTTCGGATCAGGCTGAGCAGCAGAAGCAAAACCATTTCCCTAAGGAAACATTGCATTGGAATGGCATCACCAACAAGAAGAAGGGTCAAAAATGGGGCAAAGAGAAAACCCCATCTTGGAAGAGGAACAATTCCAACAATTGTACAGGCGAACCTCTTCAGTTACCTTCTGAAGAAACTGAGCAACCTAAAATTCCGGTTCCTGTAGTTGGTCCAATAAATTTTGATGAAATTCGACCGTGCACTGGCTTGCCTCAGGAAGGTGATTTAATTGCATATCGTTTGATTGAGTTATCATCAACCTGGACACCTGAGATTTCCTCCTTCCGAGTAAAGTTCTTCTACAATGTGATTCTCTGTCTGACTCTTTGTTACCACAGCCCATGTGTTATTCTAGTAATTTTCCTATTTCAGGCTGGAAAAGTATCATGGTACGACGCTGAATCCAATCGGATTATGCTAACACCGGTTCCAGAATATCCACTACCTGTCAAAAAGGAGATTGACGAGGATTCTGAATTACAATTGGATACAACCCCGTATGGGGAAGATGGCTCTTTAAAGATAGATTTTGCCTCTCTTGTTGATCTTCGGCTTATCAGGCAAGGAAACTTGGATTCTTCAAGAACTGCAGTTAACCAGGAAATCACTTCTACTAAACAAACTGCAGAAAGTTCCAAGCTCGTCCATATCAATGGAGATTCCAACGATGCTAGACCAGGTAATGGAAAAGTAAGCGCGTGGGATGAAATCAGTGAAGCTCTGAATGCAAAGAAAGCGGAACTTTCTAAGAATGATGGTTGGAATCAAGAAGAAAGTTCAGGAAGGAGGCTATGGTCCTATAGAGCACTCAGAGGCAGCGCCCTTGGTCCAACAATGGCTCTCTTAAGAGCTCAGAATGAACTTTAA 2280 43.42 MNSLARNVSCFIRSSIHTTDSLHCQQQQWRGIRVKVLNGNLERALAILQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKVRSKELARTLKSILIKKVSSTFFAAIFPPLCCMMEAVRLRVLFKDKDLLTESLTGLSRSWIVLKPHLRTISDLSSYILSVFRLQDACPNGLILSMDGFVLPPFESVCILKDKDIVRVKKKKSKAISLNDGNRLIETEEFRERKPVDKGVKLLADKEFENESNGYESESEEDEPNATLPVKAAPIEKRVSKKRKASKIIRNSKRKKNKSSLTEEFPTIVADVQHANEKHEERNHLKSDHPQKVLVSKNDSSSSSSKCESDTSSSIENDGRSNNIVKSTAIAERADQLGAGGKHVELSDTAGESKKGPSRSTRRKKAKRRWLRERAQNEEQQQKVFETSLDQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKVVSDQAEQQKQNHFPKETLHWNGITNKKKGQKWGKEKTPSWKRNNSNNCTGEPLQLPSEETEQPKIPVPVVGPINFDEIRPCTGLPQEGDLIAYRLIELSSTWTPEISSFRVKFFYNVILCLTLCYHSPCVILVIFLFQAGKVSWYDAESNRIMLTPVPEYPLPVKKEIDEDSELQLDTTPYGEDGSLKIDFASLVDLRLIRQGNLDSSRTAVNQEITSTKQTAESSKLVHINGDSNDARPGNGKVSAWDEISEALNAKKAELSKNDGWNQEESSGRRLWSYRALRGSALGPTMALLRAQNEL 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5580052 5589386 + Lsi04G006050.1 Lsi04g00605 660654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00605 759 MobiDBLite consensus disorder prediction 328 363 - -
Lsi04g00605 759 MobiDBLite consensus disorder prediction 496 513 - -
Lsi04g00605 759 Pfam Ribosomal protein S21 34 87 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lsi04g00605 759 MobiDBLite consensus disorder prediction 415 429 - -
Lsi04g00605 759 MobiDBLite consensus disorder prediction 271 289 - -
Lsi04g00605 759 MobiDBLite consensus disorder prediction 307 327 - -
Lsi04g00605 759 Pfam Coilin N-terminus 122 291 IPR031722 -
Lsi04g00605 759 MobiDBLite consensus disorder prediction 244 437 - -
Lsi04g00605 759 MobiDBLite consensus disorder prediction 484 518 - -
Lsi04g00605 759 PANTHER COILIN P80 118 568 IPR024822 -
Lsi04g00605 759 PANTHER COILIN P80 594 757 IPR024822 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00605 K13150 COIL, CLN80; coilin - csv:101214537 955.281
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00605 Lsi-Chr4:5580052 Lsi08g01636 Lsi-Chr8:24243826 4.75E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g622 . . . . . . . Bma15g00225 . Cmo18g00758 . Cma18g00754 . Car18g00687 Sed06g1696 Cpe09g00546 Cpe01g01574 Bhi07g01803 Tan04g0152 Cmetu10g1657 . Hepe10g0055 . . Cla05g02596 Cam05g2787 Cec05g2825 Cco05g2857 Clacu05g2789 Cmu05g2637 Cre05g2753 Cone13ag1090 Cone19ag1079 . Cone12ag0681 Lsi04g00605 Csa05g02279 Chy10g00845 Cme10g00585 Blo06g00843 . . . . . . . . . . Cma04g01777 Cma05g00049 Car04g01802 Car05g00038 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005023 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 3 1 2 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00605 Lsi_Chr04 FPKM 0.378616 1.197369 5.433124 4.529806 1.980152 2.590318 1.260305 1.7839 1.566683 1.064514