Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00606 ATGGATGAAGAAAAGAGAGGGGGTGGGCTCGCGGGTTGTACTCGGAAGGCATTTTTTCGGTCGGCGTCTTGGACTGACCGGTCGCCGTCAAAGCCCCATCATAGTCGAAGTTTAGTGCCTAACAGTAATAAAGCTCGATCATGTCTGCCGCCTCTGCAGCCGCTTTCAATTAGCCGTCGGAATGTTGAGGAGTGGCCAAGAGCGGGTTCTGATGATCTTGGCGTTTGGCCAAACCCAGAAACTCCGAGGGAGCTTGTTAATAAGTCGGCTCAGAGTTCTGAATATGAACAACCTGTGAGGGAATTTCAGTTTAAGAAGGATAAACTTGCGTTCTTTGATAAGGAATGCTCGAAAATTCTTGATCATGTGTATTTAGGGAGTGATTCTGTGGCTAAGAATCGACAAGTTCTGAGGCAGAATGGAATCACTCATGTGCTGAATTGTGTTGGCTTTGTCTGTCCTGAGTACTTCAAGGGTGAATTTGTGTACAAAACTCTTTGGTTGCAAGATAGTCCTTCTGAGGATATTACTAGTATTCTCTACAATGTGTTTGATTACTTTGAAGATGTTCGTGAACAAGGCGGTCGGGTTTTCGTGCATTGTTGCCAAGGGGTGTCTCGGTCGACCTCTCTTGTGATTGCATACCTCATGTGGAAGGAAGGACAGAGCTTTCACGATGCTTTTCAAAATGTAAAGGCTGCTCGAGGAGTGGCTAATCCTAACTTGGGTTTTGCTTGTCAATTATTGCAGTGCCAGAAGCGAGTACATGCAGTGCCTGCTAGCCCGAATTCGATTTCGAGGATGTATAGGATGGCTCCACATTCGTCGTATGATCCGCTTCATCTTGTACCTAAGTTGTTGAACACTCCAAGTGTTCAAGGACTTGATTCTCGTGGGGCATTCGTTGTGCACATTCCTTCAGCTATCTATGTCTGGAAGGGGGAGAAGTGTGACTCTGTACTGTTGAATACGGCTAAGGCAGCAGCATCACAGTTCATCCGATATGAAAAAGCAAAAGGCCCCATCCTTAGCATCAAAGAAGGCGAAGAACCATTGGAATTCTGGGATGCTCTAATGAGTGGCCAAAACTTGGCTGATAGTTCAGAAGAAGGGAAAGTTCAAAAGCTTGATATTTTGTCTACCACAGAAGACCACATCTCGAAAATAACAAGTGTGAAGGTGGGTGAACGGAAAGTTGAGAAGTATAATCCAGATTTTGAAATTTTTCATAGGGCAATTTCAGGTGGGGTTGTTCCACCGTTCGATCGATTCAATACGGAATCGGAGAATTATCTTCCCACTAGAGAAATTGGGTGGGACTCGACCAAAAGGAAGTTTGAAAATGAAACTGCAAAAGATATTGTCACATCTTTATCAGAATTGGATTGTGATACTAGATCACCATTTGATGATATGGATATGACTGCAAATATTGATGAAGATGCAGAAGAAATACCTGTTTCTTCAATTGATCTTGCATCTCCACCACTTTCACCCACAACCTATTTGTGTGGTTCACCTGAATCTTTTGACTGTTTTCCAAATAGTAGCCTCGATCAGGGATTAGAAAATTCTAACGAGGAAAGCTCAATCCTAGACGATCCTTTGTCGTTACCAGTTCATCCTCTGGGGTCACCAGATTCATTTTCCTGTTTTCAAGGAGGTACTAGTCCAAAGGTTGGCACCAAATCCCCTTCACTCTCTCCTTCTACATCTGATAATTCTAGTTCTTTTACCTTTTCGCCATCATCGTCTAATTGGTCTGACTTATCATATATGTCTTCTCGACAACCTTCACCATCTGACATGGACTCATTGCATCCGGCTGTTCAAAACTCTTCCATCATAGATAATTTTTGTTTACACCACAAAGAAACTCATCCTATCTTTGTAGAGTCTTTTTCCTCTTATCATCCTGCATTAAAGGTGGAAAACACCAATTTGACATCAAGAGGAGCCTGCCCTTCAATTGCAGAGCGTCGAGGGAGTCATCCTCCACCTAGGATGTTGCTGCCCTCCATTGAAGAAGCCTGCAAGGTTCAGAGGAAAATAGTTCGATCATCGTCATTTTCTTTGCCCGACTTAGACGATGATCTGTTGGAGACATCTGGGTGCAGACAATCCAAAGATAAAAACAGTAGTAAAGATATGAATTTGGATATTGATAGATTTGGGGCTTGCACTGAATTAGATTGTAAATTTGAGGAAGGAAAAACTCTGGTCTTTTACCAGTGGCCTTCAATGAGTAAAGCGACGATCAATCAACTTAGAAGTCTCAATTCTAGATCAGTGTATATGTTGTTCGATCCAGATCTAAATTTGGATTCAAACGGCGGCAACAAACTATTTATCTGGTTGGGGCGTGAAGTTTTGCATGAAAATGATACCAGTCAACTGATGAGTGACTACAGTGGTTGTCTCCACTGGGAGATGATCGGACATATATTCATTAATAACAAGGGAATTCCTAGAGATACCCGAATACAGATAATAAGAGAAGGGGAGGAGCCCGAGGAGTTCCTTGCACTTCTAAGCCGTTCATTACCTCAAAAAAAGGAAGATGTTGATTTGTGGTCTGTGAAGACATGA 2589 42.76 MDEEKRGGGLAGCTRKAFFRSASWTDRSPSKPHHSRSLVPNSNKARSCLPPLQPLSISRRNVEEWPRAGSDDLGVWPNPETPRELVNKSAQSSEYEQPVREFQFKKDKLAFFDKECSKILDHVYLGSDSVAKNRQVLRQNGITHVLNCVGFVCPEYFKGEFVYKTLWLQDSPSEDITSILYNVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWKEGQSFHDAFQNVKAARGVANPNLGFACQLLQCQKRVHAVPASPNSISRMYRMAPHSSYDPLHLVPKLLNTPSVQGLDSRGAFVVHIPSAIYVWKGEKCDSVLLNTAKAAASQFIRYEKAKGPILSIKEGEEPLEFWDALMSGQNLADSSEEGKVQKLDILSTTEDHISKITSVKVGERKVEKYNPDFEIFHRAISGGVVPPFDRFNTESENYLPTREIGWDSTKRKFENETAKDIVTSLSELDCDTRSPFDDMDMTANIDEDAEEIPVSSIDLASPPLSPTTYLCGSPESFDCFPNSSLDQGLENSNEESSILDDPLSLPVHPLGSPDSFSCFQGGTSPKVGTKSPSLSPSTSDNSSSFTFSPSSSNWSDLSYMSSRQPSPSDMDSLHPAVQNSSIIDNFCLHHKETHPIFVESFSSYHPALKVENTNLTSRGACPSIAERRGSHPPPRMLLPSIEEACKVQRKIVRSSSFSLPDLDDDLLETSGCRQSKDKNSSKDMNLDIDRFGACTELDCKFEEGKTLVFYQWPSMSKATINQLRSLNSRSVYMLFDPDLNLDSNGGNKLFIWLGREVLHENDTSQLMSDYSGCLHWEMIGHIFINNKGIPRDTRIQIIREGEEPEEFLALLSRSLPQKKEDVDLWSVKT 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5589108 5594128 - Lsi04G006060.1 Lsi04g00606 660655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00606 862 PANTHER MKPA PROTEIN 13 841 - -
Lsi04g00606 862 MobiDBLite consensus disorder prediction 34 49 - -
Lsi04g00606 862 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 108 256 IPR029021 -
Lsi04g00606 862 Gene3D Protein tyrosine phosphatase superfamily 84 257 IPR029021 -
Lsi04g00606 862 MobiDBLite consensus disorder prediction 70 92 - -
Lsi04g00606 862 MobiDBLite consensus disorder prediction 515 532 - -
Lsi04g00606 862 Gene3D Severin 267 366 IPR029006 -
Lsi04g00606 862 SMART VILL_6 270 361 IPR007122 GO:0051015
Lsi04g00606 862 MobiDBLite consensus disorder prediction 551 608 - -
Lsi04g00606 862 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 13 841 - -
Lsi04g00606 862 ProSiteProfiles Dual specificity protein phosphatase domain profile. 115 257 IPR020422 GO:0006470|GO:0008138
Lsi04g00606 862 MobiDBLite consensus disorder prediction 515 538 - -
Lsi04g00606 862 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 174 235 IPR000387 GO:0016311|GO:0016791
Lsi04g00606 862 Gene3D Severin 739 848 IPR029006 -
Lsi04g00606 862 MobiDBLite consensus disorder prediction 24 50 - -
Lsi04g00606 862 Pfam Dual specificity phosphatase, catalytic domain 123 253 IPR000340 GO:0008138|GO:0016311
Lsi04g00606 862 SUPERFAMILY Actin depolymerizing proteins 757 848 - -
Lsi04g00606 862 CDD DSP 116 250 - -
Lsi04g00606 862 SMART dsp_5 115 254 IPR020422 GO:0006470|GO:0008138
Lsi04g00606 862 SUPERFAMILY Actin depolymerizing proteins 261 362 - -
Lsi04g00606 862 ProSitePatterns Tyrosine specific protein phosphatases active site. 199 209 IPR016130 GO:0016311|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00606 - - - bhj:120081566 1591.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00606 Lsi-Chr4:5589108 Lsi04g00858 Lsi-Chr4:8372045 7.93E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g621 . . . . . . . Bma15g00226 . Cmo18g00757 . Cma18g00752 . Car18g00686 . Cpe09g00547 Cpe01g01575 Bhi07g01805 . . . . . . Cla05g02597 Cam05g2788 Cec05g2826 Cco05g2858 Clacu05g2790 Cmu05g2638 Cre05g2754 Cone13ag1091 Cone19ag1080 Cone8ag0701 Cone12ag0682 Lsi04g00606 Csa05g02278 Chy10g00844 Cme10g00586 . . . . . . . . . . . Cma04g01778 . Car04g01803 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007047 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00606 Lsi_Chr04 FPKM 19.876801 17.798254 31.237286 30.393145 27.271288 28.788591 25.544216 24.760605 27.108379 23.337954