Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00613 ATGGCAGAGCTAGTTAAGAATCCACGGGTAATGAAGAAGCTACAAGATGAGATCAGAAGCTGCATAAAAGAAGATCTAGTGAAGGAGAACGACCTTGAAAAACTTCAATATCTAAAAGTGGTGGTGAAAGAAGTTCTAAGGTTACACCCGCCTGCCCCACTTCTACTCCCAAGAGAAACCATGTCTCAATTTAAGCTCGATAGTTACGACATTGATCCCAAAACTCATCTTCATGTCAATGTATGGGCGATTGGGCGAGATCCAAATTACTGGACTCATCCAGAAGAATTCCTACCTGAGAGATTTATGGGAAGCAATATTGATTACAAAGGGCAGAATTTTGAGTTATTACCATTTGGAGCTGGTCGAAGAATATGTCCTGGTATGAACATGGGGATTGTTACGATGGAGTTGGCTTTGGCTAATCTATTGCTACAATTTAACTGGCAGTTACCGAATGGGATTAAAGAAGAAGATGTGGACATGGAAGAGGATGTTGGTCTAACCGTGGCAAAGAAATCACCTCTTAAACTCATTCCAATTGCCTATTGA 552 40.94 MAELVKNPRVMKKLQDEIRSCIKEDLVKENDLEKLQYLKVVVKEVLRLHPPAPLLLPRETMSQFKLDSYDIDPKTHLHVNVWAIGRDPNYWTHPEEFLPERFMGSNIDYKGQNFELLPFGAGRRICPGMNMGIVTMELALANLLLQFNWQLPNGIKEEDVDMEEDVGLTVAKKSPLKLIPIAY 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5606092 5606643 - Lsi04G006130.1 Lsi04g00613 660662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00613 183 PANTHER CYTOCHROME P450 71B11-RELATED 1 181 - -
Lsi04g00613 183 Gene3D Cytochrome P450 1 179 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00613 183 PRINTS P450 superfamily signature 126 137 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00613 183 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00613 183 PRINTS P450 superfamily signature 40 51 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00613 183 PRINTS P450 superfamily signature 117 126 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00613 183 SUPERFAMILY Cytochrome P450 1 180 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00613 183 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 119 128 IPR017972 GO:0005506|GO:0016705
Lsi04g00613 183 Pfam Cytochrome P450 2 169 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00613 183 PRINTS E-class P450 group I signature 126 149 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00613 183 PRINTS E-class P450 group I signature 39 57 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00613 183 PRINTS E-class P450 group I signature 116 126 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00613 183 PRINTS E-class P450 group I signature 80 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00613 183 PANTHER CYTOCHROME P450 71B16-RELATED 1 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00613 Lsi-Chr4:5606092 Lsi04g00625 Lsi-Chr4:5718525 3.51E-106 dispersed
Lsi04g00613 Lsi-Chr4:5606092 Lsi04g00614 Lsi-Chr4:5608796 4.24E-102 tandem
Lsi02g00431 Lsi-Chr2:3566922 Lsi04g00613 Lsi-Chr4:5606092 3.79E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00613 - K01773 bhj:120082255 302.367