Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00614 ATGACGGATATATTTATAGCCGGAGTGGACACAGGAGCATGTGTCATTGTTTGGGCAATGGCAGAACTAGCTAAGAATCCAAGGGTGATGAAAAAGGTACAAGATGAGATTAGAAACTGCATAAAAGAAGATCAAGTGAAAGAGAGTGAACTCGAAAAGCTTGAATACCTTAAAATGGTGGTGAAAGAAGTTCTAAGATTACATGTGCCGGTCCCGCTTCTCCTTCCTAGAGAAACCATGTCCCATTTCAAGCTCGATGGTTACGATATTGACCCCAAAACTCATCTCTATGTTAATGCTTGGGCAATTGGGCGAGACCCAACTTACTGGATTAACCCAGAAGAATTCTTACCTGAGAGATTTATGGGAAGCAATATAGATTACAAAGGACAAAATTTTGAGTTATTACCGTTCGGAGCTGGTCGGAGAAGTTGTCCAGGGATGAACATGGCAATCATTGTGGTGGAGCTCACGTTAGCTAATCTATTGCTTCGTTTTGATTGGAAATTGCCAAATGGAATGAAAGAAGAAGATGTGAACATGGAAGAGGATGCTGTTGCCACTGAGAACTGGTTCAATTCAGCAAAATCAGTAGAGATGGCTGGAAATTTTGGCTTTGATCTTCACCTACTGCTTGATGGGAAGGTACATATTGACATTGATCGCCTTGTTCCTCACATATCGACGGAGAGACTCGAGGAAAGTTGTGAGGTGCTGTCTCTCTGTATAGACCTCGGAAGTTGCAGCCTTGATCATCAGCCAAATCATTAA 771 42.15 MTDIFIAGVDTGACVIVWAMAELAKNPRVMKKVQDEIRNCIKEDQVKESELEKLEYLKMVVKEVLRLHVPVPLLLPRETMSHFKLDGYDIDPKTHLYVNAWAIGRDPTYWINPEEFLPERFMGSNIDYKGQNFELLPFGAGRRSCPGMNMAIIVVELTLANLLLRFDWKLPNGMKEEDVNMEEDAVATENWFNSAKSVEMAGNFGFDLHLLLDGKVHIDIDRLVPHISTERLEESCEVLSLCIDLGSCSLDHQPNH 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5608796 5616995 - Lsi04G006140.1 Lsi04g00614 660663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00614 256 PANTHER CYTOCHROME P450 71B16-RELATED 1 188 - -
Lsi04g00614 256 Gene3D Cytochrome P450 1 193 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00614 256 PRINTS P450 superfamily signature 136 145 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00614 256 PRINTS P450 superfamily signature 145 156 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00614 256 PRINTS P450 superfamily signature 59 70 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00614 256 PRINTS P450 superfamily signature 7 24 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00614 256 Pfam Cytochrome P450 2 183 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00614 256 SUPERFAMILY Cytochrome P450 2 177 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00614 256 PANTHER CYTOCHROME P450 71B11-RELATED 1 188 - -
Lsi04g00614 256 PRINTS E-class P450 group I signature 16 42 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00614 256 PRINTS E-class P450 group I signature 135 145 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00614 256 PRINTS E-class P450 group I signature 145 168 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00614 256 PRINTS E-class P450 group I signature 99 123 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00614 256 PRINTS E-class P450 group I signature 58 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00614 256 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 138 147 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00614 Lsi-Chr4:5608796 Lsi04g00625 Lsi-Chr4:5718525 1.90E-102 dispersed
Lsi04g00613 Lsi-Chr4:5606092 Lsi04g00614 Lsi-Chr4:5608796 4.24E-102 tandem
Lsi04g00614 Lsi-Chr4:5608796 Lsi04g00615 Lsi-Chr4:5619360 6.27E-26 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00614 - K01773 bhj:120082255 292.352