Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00616 ATGCATTATTTCATTTGGGTTCCTCTGCTTTTTCTGTTAATTCCTCTGCTTCTCAAAGCAAAAAAGCTTCTTCACAACAACAACAAGAAGAAGAAGGTTATCATTGTTCCTCCTCCAGGCCCTGCAAAGCTCCCATTTTTGGGTCATTTACACCTCATTGGCTCTCACCCACATCGCTCTTTATGGAAACTTTCAAGAACCCACGGCCCCATCATGCTTCTCAAACTCGGCTCTGTTCCGACCGTCATCATATCTTCAGCAGCCGTCGCAAGAGAGTTGTTCAAACACCACGATCTTGCTTCTTGCAGCCGCCCTCGCTTAACGGCTAGTGGAAGATTTTCATACAACTTTTTAGACGTGAATTTATCACCATATGGTGAACGTTGGAGGGAGCTTCGAAAGATTTTTATACTTGAGCTGTTCAGCACTAAACGGGTTCAATCATTTCAGCATATTAGAGAAGAGGAGGTGGATTTGTTTATAAACACAATCTATCAATCCTCAAATTCTTCAAATCCAATTAATCTGAGTGAGATAACCTATTCTCTTACTGCAAATATAACAACACGAATTGCTTTTGGTAAGAGCTTCAGAGGTGGGGAATTAGATAATAAAAAATTTCAACAGGTAATACGTAGAGCAATAGCTGCCATTGGAAGCTTCTCATCCACCGATTTCTTTCCGAGTTTCGGTTGGATTATTGATCGACTCAGTGGTGTTCATGGGAGGTTGGAGAAGAGCTTTGCTGAGTTGGATGCGTTTTTTCAACAAGTAGTCGATGATCGCAGCAACTTCAAGCCGACTTGTCGCAGTGAAGAAAACGTTGTTGATGTTTTGTTGAGAATGGAGAGAGACAGCTCTGAATTTGATTCACTGATCCTTACACAAGATTGCATTAAAGCACTAATCATGGATATTTTTCTAGCAGGAGTGGAAACAGGAGCAAATACTATTGTTTGGGCAATGACAGAGCTGGTTAGAAATCCAAGGATAATGAAGAAGCTACAAGACCAAATCAGAAGTTGCATAAAGGAAGATCGAGTGAAAGAGGTCGACCTTGAAAAGCTTCCATATCTAAAAATGGTAGTGAAAGAGGTTTTGAGGTTGCATCCACCAGTCCCACTTCTAATTCCAAGAGAAATCATGTCTTATTTTAAGCTCAATGGTTACGATATTGATCCCAAGGCTCATCTTCACGTTAATGTATGGGTCATTGGGCGAGACCCAGATTCTTGGACTAACCCTGAAGAGTTCTTTCCAAAGAGGTTTATGGGAAGTAATATTGATTATAAGGGACAAAACTTTGAGTTATTACCATTTGGAGCTGCCGAAGAATTTGTCCTGAGATGA 1350 40.74 MHYFIWVPLLFLLIPLLLKAKKLLHNNNKKKKVIIVPPPGPAKLPFLGHLHLIGSHPHRSLWKLSRTHGPIMLLKLGSVPTVIISSAAVARELFKHHDLASCSRPRLTASGRFSYNFLDVNLSPYGERWRELRKIFILELFSTKRVQSFQHIREEEVDLFINTIYQSSNSSNPINLSEITYSLTANITTRIAFGKSFRGGELDNKKFQQVIRRAIAAIGSFSSTDFFPSFGWIIDRLSGVHGRLEKSFAELDAFFQQVVDDRSNFKPTCRSEENVVDVLLRMERDSSEFDSLILTQDCIKALIMDIFLAGVETGANTIVWAMTELVRNPRIMKKLQDQIRSCIKEDRVKEVDLEKLPYLKMVVKEVLRLHPPVPLLIPREIMSYFKLNGYDIDPKAHLHVNVWVIGRDPDSWTNPEEFFPKRFMGSNIDYKGQNFELLPFGAAEEFVLR 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5621281 5623657 - Lsi04G006160.1 Lsi04g00616 660665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00616 449 PRINTS E-class P450 group I signature 183 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00616 449 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00616 449 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00616 449 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00616 449 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00616 449 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00616 449 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00616 449 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00616 449 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00616 449 PANTHER CYTOCHROME P450 71B16-RELATED 5 443 - -
Lsi04g00616 449 Gene3D Cytochrome P450 23 443 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00616 449 PANTHER CYTOCHROME P450 71B11-RELATED 5 443 - -
Lsi04g00616 449 SUPERFAMILY Cytochrome P450 38 442 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00616 449 Pfam Cytochrome P450 38 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00616 Lsi-Chr4:5621281 Lsi04g00625 Lsi-Chr4:5718525 0 dispersed
Lsi04g00616 Lsi-Chr4:5621281 Lsi04g00617 Lsi-Chr4:5641090 1.60E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00616 - - csv:101216216 654.44