Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00620 ATGGTTAGCCTTGATGAGATTATGCATAGCATAGTTATCGTATGGCTTCCTCTAACAATGGTGCTGTTATCTTCTCTACTATTTCTTAAAACAAAGATGAAATTTGGAAGTCACAATAACAAGAAGGTTATTGTTTCTCCTCCAACCCCACCAAAGCTTCCTTTTTTAGGTCATTTACACCTCATTACCTCTCTCTCCCATCGCTCTTTTTCTAACCTTTCAAAAAAATATGGCCCCATCATCCTCCTCAAACTCGGCTCCATCCCGACTGTCGTAATCTCCTCTGCCACCGCCGCAAAAGAGGTGTTAAAAGTACACGACCTCGCTTCGTGCAGCCGACCTCAATCCACCACAGGTGCAAGATTTTCATACAACTATCTAGACATTGGGTTAGCGCCGTATGGAGATCATTGGAGAGAAGTTCGAAAGATTTGTGTGCTTGAGATGTTGAGTGCTAGAAGAGTGCAATCATTTCAAATGATAAGAGAAGAAGAGATTGGTGTGTTGTTAAATACCATTTCTCAATCTTCATCTTCTAACACTCCAATTAATCTTAGTGAGAAATTGTACTCTCTCACTGCAAATATAACAGCACGGATTGCTTTTGGGAAGTGCTTTAGAGGAAGTGAGTTAGATAATGAGAATTTTCAAATGATTATTCGAAGAGCAATGGCAATAATAGGAAGCTTTTCAGCGAATGACTTCTTTCCTAGAGTGGGTTGGATTATTGATTGGATTAGTGGTGTTCATACAAGATTGGAGAAGAGTTTTGCTGAGTTGGATGCTTTTTTTCAACATGTAGTGGATGATCGTATCAAGTTTAGGGAGATTTCTTCTCATAATGATTCTGATGATCAAGAAAACATTGTTGATGTTTTGTTGAAAATGGAGAAAGATGGCTCTGAATTTGATGTAGTGAAACTCCCTAGAGATTGCATCAAAGCACTTATCATGGTGATGAAAAAGCTACAAGGTGAGATTAGAAGTTGCGTAAAAGAAAATGAAGCAATAAAAGAGAGTGATCTCGAAAAGCTTAAATATCTAAAAGCAGTAGTGAAAGAAGTTCTAAGGTTGCATGCACCCGTCCCACTTCTCCTTCCAAGAGAAGCCATGTCCCATTTTAAGTTAAATGGTTATGATATTCATCCAAAAACTCGTGTTTATGTCAACGTGTGGGCAATCGGACGAGACCCAAAATTATGGACTAATCCAGAAGCGTTCTTGCCAGAGAGATTTATAGGAAGTAATATTGATTACAAAGGGCAGAATTTTGAGTTATTACCGTTTGGATCTGGTCGAAGAATTTGTCCTGGAATGAACATGGCAACTATTATAGTGGAGCTAGCACTAACTAATATATTGTTGTGTTTTGATTGGAAATTACCAAATGAAATGAAAGAAGAAGATGTGGATATGGAAGAGGAATTTGGTATTGCAGTTGCCAAGAAATCACCTCTTCAACTTGTTCCAGTCCATTACTTCAACTCCAAAGAATAG 1497 38.28 MVSLDEIMHSIVIVWLPLTMVLLSSLLFLKTKMKFGSHNNKKVIVSPPTPPKLPFLGHLHLITSLSHRSFSNLSKKYGPIILLKLGSIPTVVISSATAAKEVLKVHDLASCSRPQSTTGARFSYNYLDIGLAPYGDHWREVRKICVLEMLSARRVQSFQMIREEEIGVLLNTISQSSSSNTPINLSEKLYSLTANITARIAFGKCFRGSELDNENFQMIIRRAMAIIGSFSANDFFPRVGWIIDWISGVHTRLEKSFAELDAFFQHVVDDRIKFREISSHNDSDDQENIVDVLLKMEKDGSEFDVVKLPRDCIKALIMVMKKLQGEIRSCVKENEAIKESDLEKLKYLKAVVKEVLRLHAPVPLLLPREAMSHFKLNGYDIHPKTRVYVNVWAIGRDPKLWTNPEAFLPERFIGSNIDYKGQNFELLPFGSGRRICPGMNMATIIVELALTNILLCFDWKLPNEMKEEDVDMEEEFGIAVAKKSPLQLVPVHYFNSKE 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5672264 5674667 + Lsi04G006200.1 Lsi04g00620 660669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00620 498 Gene3D Cytochrome P450 32 318 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00620 498 Gene3D Cytochrome P450 319 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00620 498 SUPERFAMILY Cytochrome P450 47 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00620 498 PRINTS E-class P450 group I signature 426 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00620 498 PRINTS E-class P450 group I signature 436 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00620 498 PRINTS E-class P450 group I signature 349 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00620 498 PRINTS E-class P450 group I signature 390 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00620 498 PRINTS E-class P450 group I signature 98 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00620 498 PRINTS E-class P450 group I signature 192 210 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00620 498 PRINTS E-class P450 group I signature 74 93 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00620 498 PANTHER CYTOCHROME P450 71B16-RELATED 12 318 - -
Lsi04g00620 498 PANTHER CYTOCHROME P450 71B16-RELATED 319 493 - -
Lsi04g00620 498 PANTHER CYTOCHROME P450 71B11-RELATED 319 493 - -
Lsi04g00620 498 Pfam Cytochrome P450 319 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00620 498 Pfam Cytochrome P450 47 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00620 498 PANTHER CYTOCHROME P450 71B11-RELATED 12 318 - -
Lsi04g00620 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 429 438 IPR017972 GO:0005506|GO:0016705
Lsi04g00620 498 Coils Coil 320 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00620 - - K01773 csv:101216707 746.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00618 Lsi-Chr4:5667483 Lsi04g00620 Lsi-Chr4:5672264 0 dispersed
Lsi04g00620 Lsi-Chr4:5672264 Lsi04g00625 Lsi-Chr4:5718525 0 dispersed
Lsi04g00619 Lsi-Chr4:5670677 Lsi04g00620 Lsi-Chr4:5672264 1.05E-36 tandem
Lsi04g00620 Lsi-Chr4:5672264 Lsi04g00621 Lsi-Chr4:5675554 1.05E-36 tandem
Lsi02g00435 Lsi-Chr2:3605524 Lsi04g00620 Lsi-Chr4:5672264 2.37E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g617 . . . . . . . . . Cmo18g00751 . Cma18g00748 . . . . . Bhi07g01811 . . . . . . Cla05g02607 . . . . . . . . . . Lsi04g00620 Csa05g02273 Chy10g00837 Cme10g00595 . . . . . . . . . . . Cma04g01781 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000114 2 12 3 1 0 7 0 7 6 6 11 9 15 7 3 22 9 4 0 10 11 2 0 8 13 10 6 17 8 7 216
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00620 Lsi_Chr04 FPKM 37.663067 35.549068 1.273879 1.822364 1.864597 1.617195 2.255606 0.567346 1.017566 0.501377