Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00622 ATGCTCCTCAAACTCGGCTCAGTCCCGACCCTCGTAATCTCCTCCTCCGCCGCCGCAAAAGAGATTCTAAAAGTTAACGACCTCTCTTGTTGCAGCCGCCCTCGTTTAACCGCGGGTGGAAGATTTTCATACAAGTATTTAGACATTGTGTTAGGACAATATGGTGATCATTGGAGAGAAGTTCGAAAGATTTGTGTGGTTGGGTTGTTTAATGCTAGACGAGTGCAATCATTTCAAATGATAAGACAAGAAGAGATTGATGTGTTGTTAAATTCCATCTCTCAATCTTCATCTTCTGCCACTTCAATTAATTTAAGTGAGAAATTTTATTCTTTCACTATAAATATGACAACACGGATTGCGTTTGGGAAGAAGTTTAGAGGGGGTGAGATAGATAATGATAATATTGAAAATGTTATACGTAGAGCAGTAGTAGTATTGAAAAGCTTTTCAGCTACTGATTTCTTTCCTAGAGTGGGTTGGATTATTGATTGGCTTAGTGGTTTTCATACAAGGATGGAGAAGAGTTTTACTGAATTGGATGGTTATTTTCAACATGTTTTGGATTATCACATCAAATTTAGGAAATTTTCTGGGTGTGATGATGAAGAAAATATTGTTGATGTTTTGTTGAAAAAAGCAAGGGAGGATGTCCCTAAATTTGATGCAGATTGCATTAAGGCACTTCTCATGGATATACTATTAGCTGGAGTAGAAACAGGAGCAAACACCCTTGTTTGGGCGTTGACAGAATTGGTAAAGAATCCAAAGGTGATGAAGAAGCTGCAAGATGAAATTAGAAGTTGCATAAAAGAAGATCGGGTGAAAGAGAGCGATCTCGAAAAGCTTAAATATCTAAAAGTAGTGATGAAAGAAGTTCTAAGGTTGCATGCACTTGCTCCACTTCTGCTTCCAAGAGAAACAATGTCCCATTTTAAGTTGAATGGTTATGATATTGATCCAAAAACTCTTGTTTATATAAATGTGTGGGCAATCGGACGAGACCCAAAATTATGGACAAATCCAGAAGAGTTCTTGCCGGAGAGATTTATAGGAAGTGGTATTGATTACAAAAGACATAATTTTGAGTTATTGTCATTTGGATCTGGTCGGAGAATTTGTCCGGAGATGAATATGGCAACCATTATGATGGAGCTAACATTGGCTAATATGTTATTGTGTTTTGATTGGAAATTGCCTGCAAATATGAAAAGCAAAGATGTGGGCGTTGAAGAGGATTCTAGTTTTGTAGTTGCCAAAAAATCGCCTCTTCAACTTGTTCCAATATGTTATTTCAACTCTATTTAA 1308 37.16 MLLKLGSVPTLVISSSAAAKEILKVNDLSCCSRPRLTAGGRFSYKYLDIVLGQYGDHWREVRKICVVGLFNARRVQSFQMIRQEEIDVLLNSISQSSSSATSINLSEKFYSFTINMTTRIAFGKKFRGGEIDNDNIENVIRRAVVVLKSFSATDFFPRVGWIIDWLSGFHTRMEKSFTELDGYFQHVLDYHIKFRKFSGCDDEENIVDVLLKKAREDVPKFDADCIKALLMDILLAGVETGANTLVWALTELVKNPKVMKKLQDEIRSCIKEDRVKESDLEKLKYLKVVMKEVLRLHALAPLLLPRETMSHFKLNGYDIDPKTLVYINVWAIGRDPKLWTNPEEFLPERFIGSGIDYKRHNFELLSFGSGRRICPEMNMATIMMELTLANMLLCFDWKLPANMKSKDVGVEEDSSFVVAKKSPLQLVPICYFNSI 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5677055 5678955 - Lsi04G006220.1 Lsi04g00622 660671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00622 435 Gene3D Cytochrome P450 1 427 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00622 435 PRINTS P450 superfamily signature 288 299 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00622 435 PRINTS P450 superfamily signature 365 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00622 435 PRINTS P450 superfamily signature 236 253 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00622 435 PANTHER CYTOCHROME P450 71B16-RELATED 1 431 - -
Lsi04g00622 435 PRINTS E-class P450 group I signature 225 242 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00622 435 PRINTS E-class P450 group I signature 364 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00622 435 PRINTS E-class P450 group I signature 374 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00622 435 PRINTS E-class P450 group I signature 112 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00622 435 PRINTS E-class P450 group I signature 18 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00622 435 PRINTS E-class P450 group I signature 245 271 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00622 435 PRINTS E-class P450 group I signature 287 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00622 435 PRINTS E-class P450 group I signature 328 352 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00622 435 SUPERFAMILY Cytochrome P450 2 427 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00622 435 Pfam Cytochrome P450 3 408 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00622 435 PANTHER CYTOCHROME P450 71B11-RELATED 1 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00622 Lsi-Chr4:5677055 Lsi04g00625 Lsi-Chr4:5718525 0 dispersed
Lsi04g00622 Lsi-Chr4:5677055 Lsi04g00623 Lsi-Chr4:5705523 7.31E-123 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00622 - K01773 csv:101216707 585.874