Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00623 ATGTCTCTTCTTCTCCTCATTCTCCTATTCTCTCTACTTGTATTGATCCTAAAATGGAAGAAAAATGTAAAGAAAAAAAAGGGAAATTTTCCCCCAAGTCCACCAAAGCTTCCAATCATAGGAAACTTACACCAACTTGGGAAGCTCCCACACAAATCTCTATGGCGTCTCTCTCAGCTTTATGGCCCCATCATTAGCCTCAACCTCGGCGGCATTCAAACCACCGTCATCTCCTCCGCCTATGCCGCCCGTCGTCTCTTAAAAACACACGATCTTCAATCCTGCAGTCGACCACAAATCGAAAGTGCCAGAAAACTCACTCACAATTTCCTCGACATTGCGTTTTCCCCTTACGGTGATTACTGGCGAGAGATGAGGAAAATTTGTGTTGTTGAGCTTTTTAGTCTCAAGAGACTGAAATCTTACGAACCCATTAGAGATCAAGAAATGAGTTGGCTTATTGAATCAATTTCTGAAGTGGCTTCTTGTGGGGGCCCTGTTGATCTTACTCAGAAAACAGTGGCTCTGACTGCTGCTATTATTTTTAGAATTGCTTTTGGGAAGAAGGTGTTTGAAAAAGGGGATGGATTTCATGAGCTTGTGAATGAAGCTGAGGCTTTGTTGGGAACTTATAGTGCTTCTGAATTGTTTCCTTATTATGTTCCTAATTTTGTGGGGAAGCTAATTGATTGTGTTACTGGATATCAAACAAGGCTTCATAAGGTTTTTAATGAATTGAATGGTTTGTTTCAAGAAGTGATTGATGAACATCTTTGTCCTGAGAGGGATAAACCAGAGGAAGATGATATTATTGATGTGCTTTTGGGAATTAGCAAAAATCAAGCTCTATCAGCTGCTTCTAATGTTTCCATTACCCATGAGAATATCAAAGGCGTTCTTTTGGTAACCAAACTTTTTTCATTATCTATCTTTAATATGCATTCTAGTTTGCACCCAATCTTTTGTTCTGTTGTTGACAACATATTTTTGGCAGGATTAGACACAAGTTCCATAACAATAGTATGGGCAATGGCAGAACTTGCAAAGAATCCAAAATTAATGAAGAAAGCTCAACACGAAATCAGAAGTTACATCGGAAACAGAGGAAAAGTAACAGAGAAAGACACAGAGGAGCTTCCATATCTGAAAATGATAGTGAAAGAAACTCTGAGATTGCATCCTCCAGCACCCCTTCTTCTTCCAAGAGAAATCATATCCCATTTCGAAATGGAAGGCTTCGATTTTTACCCAAAAACAGTGGTCCAAGTCAATGCTTGGGCAATTGGACGAGACCCCAAATGCTGGAAAGACCCAGAAGAGTTCATACCAGAGAGATTTGCAGAGAGCTGTGTTGATTACAGAGGACAGCATTTTGAGTTGCTGCCGTTTGGGGCTGGCCGGAGGATTTGTCCGGCGTTGAATATGGGAATCAAAATTGTGGAGTTTGCTTTGGCGAATCTTTTGTACCATTTTGATTGGAAGTTGCCGGAAGGGATGAAGGAGGAGGATTTGGACATGGAAGAAACCTCTGGGTTTAGCCTCACCATTTACAAGAAGGTGCCTCTCAAACTTGTTCCTGTTTCATACCATCCATGA 1596 40.91 MSLLLLILLFSLLVLILKWKKNVKKKKGNFPPSPPKLPIIGNLHQLGKLPHKSLWRLSQLYGPIISLNLGGIQTTVISSAYAARRLLKTHDLQSCSRPQIESARKLTHNFLDIAFSPYGDYWREMRKICVVELFSLKRLKSYEPIRDQEMSWLIESISEVASCGGPVDLTQKTVALTAAIIFRIAFGKKVFEKGDGFHELVNEAEALLGTYSASELFPYYVPNFVGKLIDCVTGYQTRLHKVFNELNGLFQEVIDEHLCPERDKPEEDDIIDVLLGISKNQALSAASNVSITHENIKGVLLVTKLFSLSIFNMHSSLHPIFCSVVDNIFLAGLDTSSITIVWAMAELAKNPKLMKKAQHEIRSYIGNRGKVTEKDTEELPYLKMIVKETLRLHPPAPLLLPREIISHFEMEGFDFYPKTVVQVNAWAIGRDPKCWKDPEEFIPERFAESCVDYRGQHFELLPFGAGRRICPALNMGIKIVEFALANLLYHFDWKLPEGMKEEDLDMEETSGFSLTIYKKVPLKLVPVSYHP 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5705523 5708313 + Lsi04G006230.1 Lsi04g00623 660672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00623 531 PANTHER CYTOCHROME P450 71B11-RELATED 12 528 - -
Lsi04g00623 531 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00623 531 PRINTS E-class P450 group I signature 320 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00623 531 PRINTS E-class P450 group I signature 176 194 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00623 531 PRINTS E-class P450 group I signature 340 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00623 531 PRINTS E-class P450 group I signature 383 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00623 531 PRINTS E-class P450 group I signature 460 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00623 531 PRINTS E-class P450 group I signature 470 493 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00623 531 PRINTS E-class P450 group I signature 424 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00623 531 Pfam Cytochrome P450 325 515 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00623 531 Pfam Cytochrome P450 31 297 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00623 531 Gene3D Cytochrome P450 15 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00623 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 463 472 IPR017972 GO:0005506|GO:0016705
Lsi04g00623 531 PANTHER CYTOCHROME P450 12 528 - -
Lsi04g00623 531 SUPERFAMILY Cytochrome P450 31 526 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00623 531 PRINTS P450 superfamily signature 461 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00623 531 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00623 531 PRINTS P450 superfamily signature 331 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00623 - - K01773 csv:101216461 751.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00619 Lsi-Chr4:5670677 Lsi04g00623 Lsi-Chr4:5705523 2.00E-60 dispersed
Lsi04g00621 Lsi-Chr4:5675554 Lsi04g00623 Lsi-Chr4:5705523 2.00E-60 dispersed
Lsi04g00623 Lsi-Chr4:5705523 Lsi04g00625 Lsi-Chr4:5718525 6.17E-173 dispersed
Lsi04g00622 Lsi-Chr4:5677055 Lsi04g00623 Lsi-Chr4:5705523 7.31E-123 tandem
Lsi04g00623 Lsi-Chr4:5705523 Lsi04g00624 Lsi-Chr4:5708822 2.03E-167 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g616 . . . . . . . . . Cmo18g00744 . Cma18g00747 . . . . . Bhi07g01813 . . . . . . Cla05g02608 . . . . . . . . . . Lsi04g00623 Csa05g02272 Chy10g00836 Cme10g00596 Blo06g00842 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000114 2 12 3 1 0 7 0 7 6 6 11 9 15 7 3 22 9 4 0 10 11 2 0 8 13 10 6 17 8 7 216
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00623 Lsi_Chr04 FPKM 17.823765 17.853638 52.061005 51.542942 220.392807 242.607803 209.471802 21.799316 18.786922 20.567413