Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00624 ATGGTGCTTCACAATAACAAGAAGGTTATTGTTTCTCCTCCAACCCCACCAAAGCTTCCTTTTTTAGGTCATTTACACCTCATTACCTCTCTCCCCCATCGCTCTTTTTCTAACCTTTCAAAAAAATATGGTCCCATCATCTTCCTCAAACTCGGCTCCGTCTCGACCGTCGTAATATCCTCCGCCGCGGCCGCAAAAGAGGTCTTGAAAGTTCACGACCTCGCTTCTTGCAGCCGACCTCAATCCGCTGCGGGTGCAAGATTTTCATATAACTATTTAGACATTGGGTTAGCGCCGTATGGTGATCATTGGAGGGAAGTTCGAAAGATTTGTGTGCTTGAGCTGCTCAGTGCTAGAAGAGTGCAATCATTTCAAATGATACGAGAAGAAGAGATTGGTGTGTTGTTAAATACCATTTCTCAATCTTCATCTTCTAACACTCCAATTAATCTTAGTGAGAAATTGTACTCTCTCACTGCAAATATAACAACACGGATTGCTTTTGGGAAGTGCTTTAGAGGAAGTGCTTTAGATAATGAGAATTTTCAAATGGTTATTCGAAGAGTAATGGCAGTAATGGGAAGCTTTTCAGCGACTGACTTCTTTCCTAGAGTGGGTTGGATTATTGATCGGTTTAGTGGTGTTCATACAAGATTGGAGAAGAGTTTTGCTGAGTTGGATGCTTTTCTTCAACATGTAGTGGATGATCGTATCAAGTTTAGGGAGATTTCTTCTCATAATGATGATGATGATCAAGAAAACATTGTTGATGTTTTGTTGAAAATGGAGAAAGATGGCTCTGAATTTGATGTAGTGAAACTCACTAGAGATTGCATCAAAGCACTTATCATGGATATATTTCTAGCTGGAGTGGAAACAGGAGCAAACACACTTGTTTGGGCAATGACAGAGTTGGTAAAAAATCCAAAGGTGATGAAAAAGCTACAAGGTGAGATCAGAAATTGTGTAAAAGAAAATGAAGTAGTAAAGGAGAGTGATTTCGAAAAGCTTGAATATCTAAAAGCAGTAGTGAAAGAAGTTCTTAGGTTGCATGCACCCGTCCCACTCCTCATTCCAAGAGAAACCATGTTCCATTTTAAGCTAAATGGTTATGATATTTATCCAAAAACTCGTGTTCATATCAACGTGTGGGCAATCGGACGAGACCCAGAATTATGGGCTAATCCAGAAGCATTCTTGCCAGAGAGATTTATGGGAAGTAATATTGATTACAAAGGGCAGAATTTTGAGTTATTACCATTTGGATCTGGTCGAAGAATTTGTCCTGGGATGAACATGGCAACCATTACCGTGGAGCTAGCACTGGCTAATATATTGTTGTGTTTTGATTGGAAATTACTAAATGGAATGAAAGAAGAAGATGTGGATATAGAAGAGGAAAGTGGTATTGCAATTGCCAAGAAATCACCTCTTCAACTTGTTCCAGTCCATTACTTCAACTCCAAAGAATAG 1473 39.51 MVLHNNKKVIVSPPTPPKLPFLGHLHLITSLPHRSFSNLSKKYGPIIFLKLGSVSTVVISSAAAAKEVLKVHDLASCSRPQSAAGARFSYNYLDIGLAPYGDHWREVRKICVLELLSARRVQSFQMIREEEIGVLLNTISQSSSSNTPINLSEKLYSLTANITTRIAFGKCFRGSALDNENFQMVIRRVMAVMGSFSATDFFPRVGWIIDRFSGVHTRLEKSFAELDAFLQHVVDDRIKFREISSHNDDDDQENIVDVLLKMEKDGSEFDVVKLTRDCIKALIMDIFLAGVETGANTLVWAMTELVKNPKVMKKLQGEIRNCVKENEVVKESDFEKLEYLKAVVKEVLRLHAPVPLLIPRETMFHFKLNGYDIYPKTRVHINVWAIGRDPELWANPEAFLPERFMGSNIDYKGQNFELLPFGSGRRICPGMNMATITVELALANILLCFDWKLLNGMKEEDVDIEEESGIAIAKKSPLQLVPVHYFNSKE 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5708822 5710894 - Lsi04G006240.1 Lsi04g00624 660673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00624 490 PANTHER CYTOCHROME P450 71B11-RELATED 8 485 - -
Lsi04g00624 490 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 421 430 IPR017972 GO:0005506|GO:0016705
Lsi04g00624 490 Gene3D Cytochrome P450 2 483 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 SUPERFAMILY Cytochrome P450 13 482 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 PRINTS E-class P450 group I signature 341 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 PRINTS E-class P450 group I signature 278 295 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 PRINTS E-class P450 group I signature 64 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 PRINTS E-class P450 group I signature 158 176 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 PRINTS E-class P450 group I signature 428 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 PRINTS E-class P450 group I signature 418 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 PRINTS E-class P450 group I signature 298 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 PRINTS E-class P450 group I signature 40 59 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 PRINTS E-class P450 group I signature 382 406 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 PANTHER CYTOCHROME P450 71B16-RELATED 8 485 - -
Lsi04g00624 490 Pfam Cytochrome P450 13 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 Coils Coil 312 332 - -
Lsi04g00624 490 PRINTS P450 superfamily signature 289 306 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 PRINTS P450 superfamily signature 419 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 PRINTS P450 superfamily signature 428 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00624 490 PRINTS P450 superfamily signature 342 353 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00623 Lsi-Chr4:5705523 Lsi04g00624 Lsi-Chr4:5708822 2.03E-167 tandem
Lsi04g00624 Lsi-Chr4:5708822 Lsi04g00625 Lsi-Chr4:5718525 0 tandem
Lsi02g00436 Lsi-Chr2:3616233 Lsi04g00624 Lsi-Chr4:5708822 9.42E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00624 - - csv:101216707 780.4