Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00625 ATGGTTAGCCTTGATGAGATTATGCATAGCATTGTTATCATGTGGCTTCCTCTAACAATGGTGCTGTTATCTTCTCTACTATTTCTTAAAACAAAGATGAAATTTGGAAGTCACAATAACAAGAAGGCTATTGTTTCTCCTCCAACTCCACCAAAGCTTCCTTTTTTAGGTCATTTACACCTCATTACCTCCCTCCCCCATCGCTCTTTTTCTAACCTTTCAAAAAAATATGGCCCCATCATCTTCCTCAAACTCGGCTCCGTCCCGACCGTCGTAATCTCCTCCGCCACGGCCGCAAAAGAGGTCTTGAAAGTTCACGACCTCGCTTCTTGCAGCCGACCTCAATCCGCAGCTAGTGCAAGATTTTCATACAACTATTTAGACATTGGGTTAGCACCATATGGTGATCATTGGAGGCAAGTTCGAAAGATTAGTGTGCTTGAGCTGTTCAGTGCTAGAAGGGTGCAATCATTTCAAATGATAAGAGAAGAAGAGATTGGTGTGTTGTTAAATACCATTTCTCAATCTTCATCTTCTGCCACTCCAATTGATTTGAGTGAGAAATTTTATTCTCTCACTGCAAATATGATAACCCGAATTGCTTTTGGGAAGTGCTTTAGAGGAAGTGAGTTAGATAATGAGAAATTTCAAAAGGTTATTCGAAGAGCAGTTGCAGCATTGGGAAGCTTTTCAGCGACTGACTTCTTTCCTAGAGTGGGTTGGATTATTGATCGGTTTAGTGGCGTTCATACAAGATTGGAGAAGAGTTTTGCTGAGTTGGATGTTTTTTTTCAACATGTAGTGGATGATCGTATCAAGTTTAGGGAGATTTCTTCTCATAATGATTCTGATGATCAAGAAAACATTGTTGATGTTTTGTTGAAAATGGAGAAGGATAGCTCTGAATTTGATGCAGTAAAACTCACTAGAGATTGCATCAAAGCACTTGTTATGGATATATTTCTAGCTGGAGTGGAAACAGGAGCAAACACACTTGTCTGGGCAATGACAGAGCTGATCAAGAATCCAAAGGTGATGAAAAATCTACAAGGTGAGATCCGAAGTTGTGTAAGAAAAAATGTAGTAAAAGAGAGTGACCTTGAAAAGCTTGAATATCTAAAAGCAGTGGTAAAAGAAGTTCTAAGGTTGCATACACCCGCCCCACTTCTCCTTCCAAGAGAAACCATGTCCCATTTTAAGCTAAATGGTTATGATATTCATCCAAGAACTCATGTTCATGTCAATGTGTGGGCGATCGGACGAGACCCAGAATTATGGACTATTCCAGAAGAGTTTTTGCCTGAAAGATTTATAGGAAGTAGTATTGATTACAAAGGGCAAAATTTTGAGTTATTGCCATTTGGATCTGGTCGAAGAATTTGTCCTGGGATGAATATGGCAACCATTACCGTGGAGTTAGCACTGGCTAATATATTGTTGTGTTTTGATTGGAAATTACCGAATGGAATGAAAGAAGAGGATGTGGATATGGAAGAGGAAACTGGTCTTGCAGTTGCCAAGAAATCACCTCTTCAACTTGTTCCAGTCCATTACTTCAACTCCAAAGAATAG 1572 39.69 MVSLDEIMHSIVIMWLPLTMVLLSSLLFLKTKMKFGSHNNKKAIVSPPTPPKLPFLGHLHLITSLPHRSFSNLSKKYGPIIFLKLGSVPTVVISSATAAKEVLKVHDLASCSRPQSAASARFSYNYLDIGLAPYGDHWRQVRKISVLELFSARRVQSFQMIREEEIGVLLNTISQSSSSATPIDLSEKFYSLTANMITRIAFGKCFRGSELDNEKFQKVIRRAVAALGSFSATDFFPRVGWIIDRFSGVHTRLEKSFAELDVFFQHVVDDRIKFREISSHNDSDDQENIVDVLLKMEKDSSEFDAVKLTRDCIKALVMDIFLAGVETGANTLVWAMTELIKNPKVMKNLQGEIRSCVRKNVVKESDLEKLEYLKAVVKEVLRLHTPAPLLLPRETMSHFKLNGYDIHPRTHVHVNVWAIGRDPELWTIPEEFLPERFIGSSIDYKGQNFELLPFGSGRRICPGMNMATITVELALANILLCFDWKLPNGMKEEDVDMEEETGLAVAKKSPLQLVPVHYFNSKE 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5718525 5720995 - Lsi04G006250.1 Lsi04g00625 660674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00625 523 SUPERFAMILY Cytochrome P450 47 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 Gene3D Cytochrome P450 32 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PRINTS E-class P450 group I signature 74 93 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PRINTS E-class P450 group I signature 98 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PRINTS E-class P450 group I signature 374 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PRINTS E-class P450 group I signature 415 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PRINTS E-class P450 group I signature 192 210 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PANTHER CYTOCHROME P450 71B16-RELATED 12 518 - -
Lsi04g00625 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
Lsi04g00625 523 Pfam Cytochrome P450 47 507 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PRINTS P450 superfamily signature 461 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PRINTS P450 superfamily signature 375 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00625 523 PANTHER CYTOCHROME P450 71B11-RELATED 12 518 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00613 Lsi-Chr4:5606092 Lsi04g00625 Lsi-Chr4:5718525 3.51E-106 dispersed
Lsi04g00614 Lsi-Chr4:5608796 Lsi04g00625 Lsi-Chr4:5718525 1.90E-102 dispersed
Lsi04g00616 Lsi-Chr4:5621281 Lsi04g00625 Lsi-Chr4:5718525 0 dispersed
Lsi04g00617 Lsi-Chr4:5641090 Lsi04g00625 Lsi-Chr4:5718525 0 dispersed
Lsi04g00620 Lsi-Chr4:5672264 Lsi04g00625 Lsi-Chr4:5718525 0 dispersed
Lsi04g00622 Lsi-Chr4:5677055 Lsi04g00625 Lsi-Chr4:5718525 0 dispersed
Lsi04g00623 Lsi-Chr4:5705523 Lsi04g00625 Lsi-Chr4:5718525 6.17E-173 dispersed
Lsi06g01591 Lsi-Chr6:26302596 Lsi04g00625 Lsi-Chr4:5718525 6.77E-143 dispersed
Lsi04g00624 Lsi-Chr4:5708822 Lsi04g00625 Lsi-Chr4:5718525 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00625 - K01773 csv:101216707 823.928