Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00627 AATTCTAAGGAAGGAGGTCAAAGAGAGTTTGATTCGTATGGGTCTGGTAATTCTTCAACATGGAATCAATTCAATTATCCTCCACCATCACCACATGTTCAACAATATCCATATCCAGAACCCTCTGATTATGAGTCACAAACGCCCCAACCACAACCACAGAGGAGGCTGGACAGAAAATATTCAAAAATAGCAGACAATTACCGATCCTTGGATGAGGTGACTGCTGCTCTTGCTCAAGCCGGACTTGAGTCATCTAATCTCATTGTGGGAATTGATTTCACAAAGAGCAATGAGTGGACAGGTTCAAGGTCGTTTAATCGACGTAGTTTACACCACATTGGGAATGGGCAGAATCCATATGAACAAGCTATATCTATAATAGGACAGACATTATCAGCTTTCGACGAAGATAACTTGATTCCCTGTTATGGATTTGGAGATGGTAATTGCATTTATTCAAACCGTTATCTCGATTCTTGCTATAATCTTTTGTTGACAGGGGAATTATTGACAGTTGAAGTGTGTTTTTTTGCAGCATCAACCCATGATCAAGATGTTTTTAGCTTCTACGAGGATGAGAGGATATGTAATGGATTTGAGGAAGTTTTGCATCGTTACAGAGAAATTGTTCCCAACTTAAGACTTGCAGGGCCTACATCTTTTGCACCTATAATTGAGATGGCCATGACAATAGTTGAGGAAACTGGTGGTCAGTACCATGTTTTGCTGATAATCGCCGATGGGCAGGTCACAAGAAGCGTTGACACGCATAATGGTCAACTGAGTTTACAAGAACAAAAGACGATCGATGCGATTGTAAGGGCGAGCCACAAGTATACTTGCAGCGAGTACCCCTTGTCGATAATCTTAGTTGGCGTTGGAGATGGACCTTGGGATATGATGAAGGAATTCGATGATAACATCCCAGCTCGAGCTTTCGATAATTTTCAGTTCGTCAATTTTACCGAGGTGATGTCAAAAAATGTAAACAATGTCAGAAGGCAGACAGAGTTTTCTCTTGCTGCATTGATGGAAATACCTTCTCAATATCAGGCAACTCTAGAGCTTGGCCTATTGGGGAATGCTATTTCTTTACTAAGACAAAGAGGGATTTCACCAGAAAGAGTACCTCTTCCTCCTCCTCTGTACAGTGCAACAGCTTCGAGTGGCTACTCAAGAACCCCGCGCTCCAACAGTTTTCAGACCAGAACACCTTCATTTGGTAGATACAACCAAGGGGTTGGCACAACTCCATCCTCAAGTTCTCCTTATGATAACCAGCTTTGTCCCATTTGTCTCACTAATCCAAAGGATATGGCTTTTGGTTGCGGGCATCTGGTAAGATCCAAATCCTGTGCTTATCCTGACATGTTGCGACTGCGGAGAAAATCTCGAGTTGTGCCCCATATGCCGAAGCTTTATTCAGAC 1431 42.49 NSKEGGQREFDSYGSGNSSTWNQFNYPPPSPHVQQYPYPEPSDYESQTPQPQPQRRLDRKYSKIADNYRSLDEVTAALAQAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGNGQNPYEQAISIIGQTLSAFDEDNLIPCYGFGDGNCIYSNRYLDSCYNLLLTGELLTVEVCFFAASTHDQDVFSFYEDERICNGFEEVLHRYREIVPNLRLAGPTSFAPIIEMAMTIVEETGGQYHVLLIIADGQVTRSVDTHNGQLSLQEQKTIDAIVRASHKYTCSEYPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEVMSKNVNNVRRQTEFSLAALMEIPSQYQATLELGLLGNAISLLRQRGISPERVPLPPPLYSATASSGYSRTPRSNSFQTRTPSFGRYNQGVGTTPSSSSPYDNQLCPICLTNPKDMAFGCGHLVRSKSCAYPDMLRLRRKSRVVPHMPKLYSD 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5738272 5740777 + Lsi04G006270.1 Lsi04g00627 660676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00627 477 PANTHER COPINE III-LIKE 177 451 - -
Lsi04g00627 477 PANTHER COPINE III-LIKE 20 149 - -
Lsi04g00627 477 MobiDBLite consensus disorder prediction 40 55 - -
Lsi04g00627 477 PANTHER COPINE FAMILY PROTEIN 1 177 451 - -
Lsi04g00627 477 PANTHER COPINE FAMILY PROTEIN 1 20 149 - -
Lsi04g00627 477 Pfam Copine 110 148 IPR010734 -
Lsi04g00627 477 Pfam Copine 180 360 IPR010734 -
Lsi04g00627 477 SMART VWA_4 85 322 IPR002035 -
Lsi04g00627 477 MobiDBLite consensus disorder prediction 386 424 - -
Lsi04g00627 477 MobiDBLite consensus disorder prediction 383 424 - -
Lsi04g00627 477 MobiDBLite consensus disorder prediction 1 58 - -
Lsi04g00627 477 MobiDBLite consensus disorder prediction 7 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00627 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101204341 701.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00627 Lsi-Chr4:5738272 Lsi06g01600 Lsi-Chr6:26387254 0 dispersed
Lsi04g00627 Lsi-Chr4:5738272 Lsi02g01606 Lsi-Chr2:21933503 2.86E-177 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g611 Blo01g00803 . Bda01g01762 . . . Bma14g01830 . . Cmo18g00725 . Cma18g00733 . . . Cpe09g00556 . Bhi07g01827 . . . . . . Cla05g02613 Cam05g2801 Cec05g2837 Cco05g2869 Clacu05g2804 Cmu05g2652 Cre05g2769 Cone13ag1094 . . . Lsi04g00627 Csa05g02262 Chy10g00832 Cme10g00600 . . Bda07g01646 . . Bpe02g01936 Bma01g00518 . . Cmo04g02800 . . . . . . . . . . . . . . . . . . . . . . . Chy09g00375 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00627 Lsi_Chr04 FPKM 25.456184 28.101278 26.803755 28.8542 23.765842 23.050714 24.621681 33.400299 33.313126 30.300161