Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00630 ATGGGGGTTGGATTTGGGAAGGTTTACAAGGACTTAGGTGTCAAGGCCAAAGAGTCTTATGTGGTTGCTGGTAGCATTGCCGAACAAGCGGTCTCTTCGATCCGCACTGTGTGTGCTATGAATGCACTCCCAAATCTCTCTTTTATCTCTGAGTCAACAATTGCTGCATCTCGCATTTTCGAGACGACTGACTGCATTCCCGCCATAGATGCTGAAGATGGTAGAGGAAAATCTTTGGACTGTTTAAGAGGAAAGATTGAATTTAGAGATGTTGAATTTTCCTATCCTTCCAGACCTACAACCCCCATTCTTCAAGGACTCAATCTCAAAGTAAAGGCTGGGGATACAGTAGGCCTTGTTGGAGGTAGTGGCTCAGGCAAGTCCACTGTGATTCATTTATTGGAGAGATTCTATGACCCTATCAAAGGAGACATTCTTCTTGATGGTCATAAGATAAAGAAGCTTCAACTTAAATGGCTGAGATCCCAAATGGGTTTAGTCAATCAAGAGCCAATTCTATTTGCAACCTCCATAAAGGAAAATATTATGTTTGGTAAGGAAGGAGCTTCAATGCAACTTGTTAAGAGAGCAGCTAAGGCTGCAAATGCTCATGATTTCATTGCAACATTACCTGATGGATATGAGACTCAAGTGGGGCAATTTGGTGTCCAATTGTCTGGAGGGCAAAAGCAAAGAATTGCCATAGCAAGGGCTCTAATCAGAGATCCCAAAATTCTTCTATTGGATGAAGCAACTAGTGCTTTGGATGCAGAGTCTGAAAGAATTGTACAAGATGCCCTGGACCAAGCTTCACATATTGAAGCTGGAACAACAGTTGCATTGGTTGGGCAGAGTGGTTCGGGTAAATCTACCGTTATCGGACTGATCGAAAGATTTTACGATCCTCAAAAAGGAGTAGTCCTCATTGACGGAATAGACATCAAGAGCTATAATCTGAGAAGTTTGAGGTCACACATTGCTCTAGTGAGTCAAGAACCTGCACTTTTCGCAGGAACGATACGCAAGAACATTCTATTCGGGCAAGACGAAGGTTCCGAAAACGAAACTAGGAAGGCTGCAAAACTTGCCAATGCTCATGAGTTCATTAGTTCTATGAAGGATGGTTATGAGACTCAATGTGGAGAAAGAGGAGTTCAGTTATCAGGAGGTCAGAAGCAGAGAATAGCTTTAGCAAGAGCCATATTAAAGAATCCAAAAATCCTTCTACTAGATGAGGCAACCAGTGCTTTAGATAGTTTGTCAGAGACTTTAGTCCAAGAAGCATTGGAAAAGATGATGGTTGGTAGAACAAGCCTCGTCGTCGCTCATCGATTGTCTACTATACAAAAAGCAGATTCAATAGCTGTAATAAAACAAGAATCCAAATATGATTATGATGTCTAG 1404 41.88 MGVGFGKVYKDLGVKAKESYVVAGSIAEQAVSSIRTVCAMNALPNLSFISESTIAASRIFETTDCIPAIDAEDGRGKSLDCLRGKIEFRDVEFSYPSRPTTPILQGLNLKVKAGDTVGLVGGSGSGKSTVIHLLERFYDPIKGDILLDGHKIKKLQLKWLRSQMGLVNQEPILFATSIKENIMFGKEGASMQLVKRAAKAANAHDFIATLPDGYETQVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQDALDQASHIEAGTTVALVGQSGSGKSTVIGLIERFYDPQKGVVLIDGIDIKSYNLRSLRSHIALVSQEPALFAGTIRKNILFGQDEGSENETRKAAKLANAHEFISSMKDGYETQCGERGVQLSGGQKQRIALARAILKNPKILLLDEATSALDSLSETLVQEALEKMMVGRTSLVVAHRLSTIQKADSIAVIKQESKYDYDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5775644 5783492 - Lsi04G006300.1 Lsi04g00630 660679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00630 467 ProSitePatterns ABC transporters family signature. 225 239 IPR017871 GO:0005524
Lsi04g00630 467 PANTHER OS04G0481700 PROTEIN 39 272 - -
Lsi04g00630 467 PANTHER OS04G0481700 PROTEIN 272 459 - -
Lsi04g00630 467 PANTHER OS04G0481700 PROTEIN 2 39 - -
Lsi04g00630 467 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 272 459 IPR039421 -
Lsi04g00630 467 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 2 39 IPR039421 -
Lsi04g00630 467 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 39 272 IPR039421 -
Lsi04g00630 467 Gene3D - 77 271 IPR027417 -
Lsi04g00630 467 Pfam ABC transporter 272 415 IPR003439 GO:0005524
Lsi04g00630 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 270 IPR027417 -
Lsi04g00630 467 SMART AAA_5 113 274 IPR003593 -
Lsi04g00630 467 SMART AAA_5 275 461 IPR003593 -
Lsi04g00630 467 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 86 329 IPR003439 GO:0005524
Lsi04g00630 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 459 IPR027417 -
Lsi04g00630 467 Pfam ABC transporter 104 253 IPR003439 GO:0005524
Lsi04g00630 467 Gene3D - 272 465 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00630 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - csv:101217411 410.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00630 Lsi-Chr4:5775644 Lsi04g01239 Lsi-Chr4:19237957 5.54E-58 dispersed
Lsi04g00630 Lsi-Chr4:5775644 Lsi04g01761 Lsi-Chr4:24854240 5.75E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g601 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02617 . . . . . . . Cone19ag1084 . . Lsi04g00630 Csa05g02257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00630 Lsi_Chr04 FPKM 22.443741 24.447538 20.93577 21.098276 28.48436 27.588039 27.62644 14.516268 13.394313 13.757298