Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00631 ATGGCGGAAACCGGCGTCTATGGCCGTTTTCTGGCGGGGAGTTTAGACCCAAGAGCCCAAGAGTTCCGGCCGAGGTATTCCACCACTCTCTTCATGCCGCAGCCTCACCGTGTTTTCTTTCCGTACCCACCAATTGGCGACGTTCCTTTTCTGCCGTACTGTGAGGGCGGTGTAGCTTACGCGCCGTTTCCAGCGGCGGAGCCAGCGTACGTTCCGATACGGTCGCCGGTGTCGTCGGTTGCGACTCGATCGCTGGTGGTGAGTTCGGTTCCTTGCGACGTAAGCGAGACGATGGTGAGAAGGGAATTGGAAGCGTTTGGGGAGGTTCGAGGAGTGCAAATGGAGAGGGTTAAAGAAGGGATTGTAATTGTTCATTTCTATGATATTCGCCACGCCGAGAGAGCTGTGCGAGAGATTCGAGATCAACACATGCACCATCAATGCCGTCTTCGTAACTACTTCAACAACAACAATAATAACGGTTTCTTGTTTTCAAATTCCTCTCTCCCTCGCCCTTCTCCGGCGCCTGGCCTCGTCGCCGGCCATGCTGTCTGGGCCCAGTTCATCGTTCCGGCTGGCAAGAATCAGGGGACCATAGTCGTCTTCAATTTGGATTCCACCGTTTCCACTTCTTGTCTCAGAGAAATCTTCGAGGCTTTTGGTATACTCTATTCAACTCCTTTCTGGGTTTTGATTTTGATTTTGTTTTTTGTGGGTCCTGTGAAGGAGTTGAGAGAGACGCCGTTGAAGAAGCAGCAAAGGTTCGTTGAATTTTTCGACATCAGGGACGCCGGAAAGGCTCTTAAGGAGATGAACGGAAAGGAAATCAATGGAAAATCGGTTGTGATTGAGTTCAGTCGGCCAGGTGGTCATGGCAACAAATTCTTCAATGCCAACTTGTCTGCTCCGGCCATCTGCGGCTCGAATAATATATATTCTAGAAGTCTGAAATGCCCACCGCCACGGCCTCCACCGTCGCCGCCGAGAAATTTCTCTGGTGGGGCAGGTTCAAATGTTCCGCACCGCTGGTATTATTCGAAACCCCATAGTTCCTCTAGGAAATTGAATCCGAGTAAGGGAAGTCGAAGCCCGAGAAACCCCAGGAAGAGCTTGGAGTCCGACGATGTGAATGGAAAAATGGCTTCTCTCGATTTGGAAGGCGGCGGTGTGTGCAATGAAATTGAAGAGAGAGAATCATGTGGGGTTTTGAGAAAGAATTCCAAGACAAGCCACAGTAGTCCCGATGTAGCTGCTGACCAACAACAACTGCAGCCCAGTAGGAATAAGCTAAGGAAATGTAGACAGTCCAGGAAGTTCGATACTCGATTCCTGATAGACGATAACGATTCTGATTGCAGAGATTCGAGAACCACTGTGATGATCAAGAACATCCCCAACAAGTACAGTCAGAAATTGTTGTTGAACATGTTGGACAATCATTGCATTCACTGCAACGAGCAGATGGGCGATGGCCATAACCAGCCACTTTCCTCCTACGATTTTGTATATCTCCCCATTGATTTCAACAACAAGTGCAATGTTGGATATGGGTTTGTAAACATGACCTCACCGGAGGCGACATGGAGGTTGTACAAGGCGTTTCATCTTCAACCTTGGGAGGTTTTTAACTCCAGAAAAATCTGTGAAGTCACCTATGCTAGAGTACAGGGACTGGAATCACTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGACCACTACCTGCCAGTGGTGTTTTCCCCGCCTCGGGACGGGAGGGGACTGACGGAGCCACTGCCGATTGGCGGCCAGAGACAGCCCATCTCCATTGGCCTCTCAACTACTCCATCTTCTGGCAATGCTGATGAGATGGACGGTGAAGATGATGTTGTAACAAGATCACTGGTTGACCAACAGGAGGAAGGCATGAATGGAAACAGCAGCAGCAGTAGCAGTGGCAGCATTGGTTGCAGTAGCCAAAGTGGCGGTGGTGTTGATGAAGAATACGACGGTGATGACTATAAAGGTAATTTCCTTCATTATAATATGATGATGATGATGATGTTTGATTCAGAGGATGTTATGCCCTTATGA 2082 49.09 MAETGVYGRFLAGSLDPRAQEFRPRYSTTLFMPQPHRVFFPYPPIGDVPFLPYCEGGVAYAPFPAAEPAYVPIRSPVSSVATRSLVVSSVPCDVSETMVRRELEAFGEVRGVQMERVKEGIVIVHFYDIRHAERAVREIRDQHMHHQCRLRNYFNNNNNNGFLFSNSSLPRPSPAPGLVAGHAVWAQFIVPAGKNQGTIVVFNLDSTVSTSCLREIFEAFGILYSTPFWVLILILFFVGPVKELRETPLKKQQRFVEFFDIRDAGKALKEMNGKEINGKSVVIEFSRPGGHGNKFFNANLSAPAICGSNNIYSRSLKCPPPRPPPSPPRNFSGGAGSNVPHRWYYSKPHSSSRKLNPSKGSRSPRNPRKSLESDDVNGKMASLDLEGGGVCNEIEERESCGVLRKNSKTSHSSPDVAADQQQLQPSRNKLRKCRQSRKFDTRFLIDDNDSDCRDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQMGDGHNQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATWRLYKAFHLQPWEVFNSRKICEVTYARVQGLESLKEHFKNSKFPCEMDHYLPVVFSPPRDGRGLTEPLPIGGQRQPISIGLSTTPSSGNADEMDGEDDVVTRSLVDQQEEGMNGNSSSSSSGSIGCSSQSGGGVDEEYDGDDYKGNFLHYNMMMMMMFDSEDVMPL 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5788627 5791556 - Lsi04G006310.1 Lsi04g00631 660680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00631 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 288 IPR000504 GO:0003723
Lsi04g00631 693 PANTHER TERMINAL EAR1-LIKE 1 238 647 - -
Lsi04g00631 693 PANTHER TERMINAL EAR1-LIKE 1 32 223 - -
Lsi04g00631 693 CDD RRM3_EAR1_like 456 557 IPR034458 -
Lsi04g00631 693 SUPERFAMILY RNA-binding domain, RBD 83 225 IPR035979 GO:0003676
Lsi04g00631 693 PANTHER RNA BINDING PROTEIN 238 647 - -
Lsi04g00631 693 PANTHER RNA BINDING PROTEIN 32 223 - -
Lsi04g00631 693 MobiDBLite consensus disorder prediction 633 657 - -
Lsi04g00631 693 MobiDBLite consensus disorder prediction 317 384 - -
Lsi04g00631 693 SMART rrm1_1 84 151 IPR000504 GO:0003723
Lsi04g00631 693 SMART rrm1_1 198 284 IPR000504 GO:0003723
Lsi04g00631 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 157 IPR000504 GO:0003723
Lsi04g00631 693 Gene3D - 78 155 IPR012677 -
Lsi04g00631 693 MobiDBLite consensus disorder prediction 404 429 - -
Lsi04g00631 693 Pfam RNA recognition motif 2 456 566 IPR007201 -
Lsi04g00631 693 SUPERFAMILY RNA-binding domain, RBD 198 535 IPR035979 GO:0003676
Lsi04g00631 693 MobiDBLite consensus disorder prediction 405 429 - -
Lsi04g00631 693 CDD RRM1_EAR1_like 82 150 - -
Lsi04g00631 693 MobiDBLite consensus disorder prediction 349 364 - -
Lsi04g00631 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 281 IPR000504 GO:0003723
Lsi04g00631 693 Gene3D - 192 294 IPR012677 -
Lsi04g00631 693 MobiDBLite consensus disorder prediction 589 666 - -
Lsi04g00631 693 MobiDBLite consensus disorder prediction 603 617 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00631 - - - cpep:111791714 1097.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00183 Lsi-Chr1:1776237 Lsi04g00631 Lsi-Chr4:5788627 2.11E-17 transposed
Lsi04g02370 Lsi-Chr4:30830465 Lsi04g00631 Lsi-Chr4:5788627 7.79E-26 transposed
Lsi09g00993 Lsi-Chr9:13540912 Lsi04g00631 Lsi-Chr4:5788627 9.75E-29 transposed
Lsi09g01769 Lsi-Chr9:26445413 Lsi04g00631 Lsi-Chr4:5788627 1.17E-20 transposed
Lsi11g01636 Lsi-Chr11:24689574 Lsi04g00631 Lsi-Chr4:5788627 2.02E-23 transposed
Lsi04g00631 Lsi-Chr4:5788627 Lsi08g01631 Lsi-Chr8:24222461 9.42E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00631 Lsi_Chr04 FPKM 2.519389 2.743636 20.294832 23.901482 73.305977 75.402962 80.899406 31.902748 30.440151 32.567719