Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00632 ATGAGGCAAGCCATCCCCAAAATGGCGGCCGCCAGCTCCGTTAATACCTTCACGACCGTACCCAATTGCCCCGCCGATGTTTCTCGCCTTCTCCGGTCACGGAGGACGGTGCTTCAGTCGGAAATGGGAGCTTCTGGATACTTTTTCAGTGCTACGAAACTTCGTCTGCTTCATTGTAAAACCGCTGTTGCAGCGCTTCAAAACGAATTTTCTTCCCGCAAGTTTACCGATAGCTCGCAGGGTGTCCAATTCGGTGGTGAAGAATTTGTGACAAGATTACTGGCCAGAAGATGGGCGTTGGATAACCCCGATACCAAAATAAACAAAGTTATGTTCTCAACTGCAGATACAAATCTCCATGATGTTCCAGCCGGTCATCTCTACTTGGGAGTAGATACTGATATTTGTACATCTAATGATGTATCGGCGGCAGATTATTCAGAGCAATCATTCTATGTAGTTAGGGATGATTTATTACATCCGCTGATAAATGGTAATAAGGCAAGAAAATTGGATGGGGTTCTACCTCTTATTAAAGATAATTCAGTGACTGATGTGAGGAAGCATTTGGCGTTACATGTGGGGGTTGTCAAAGTGCACATGCAGCTGCTACTGGTAGGAGTTTTCCTGTCTGAAAAAACTTCTCTTCGTTTCTTTATTCTTCGCACAGGCCATAATGGCAAGAAAAGGGATGGTGTTCTCAAGGATTTGGGTACATTTGATTCAGTTGCACTTGTGCCACATCTTCTATGTCTTCCTTTCTCCCCTCCCCAGGCAAATGTAAATGAGCCTGGTCGAAATTTGTTTCTGCATACTGATTTTCTACTTTCAGCTGTTTTATGTGCAGAAAGAGGTTTGAGGTCACATTTACTTCTACGAGGGGAGCAACCTGAATTTTTAACAGGATACAACTTAATGTCAACAATATATGGAAACGTTACATATGTTCCAAGATCTATTTATGCCAATAGGGAAAAAATGCTCAAGACTCAAGCTGATTTGGTGGCAGGCAGTAGTGGCAATATCTTATGGTTAGATGATATTTTCCCAACTTCTCTCGGGAAGCAACCATGTTCTACTACAAATTCTGTGCATATTGATTATGATTTTCATAGAATGGCTAGAAAGCATGGAAGAAGGGTTATCGTTATCAACGAAGGAGCTGGAGATGCTATCGCCTTGCTAGGCATTGTTTCATTGCTAAATTACCTTTCCCAGGATCATTTACTTGGGAAACAGAGAGCTGTTAAATTTGTTGTAGACGCCGGCACTGGGACAACTGCTATTGGTTTGGGTCTTGGAGCTCTATGTTTAGGGCTCCCCTGGGAGGTAACTGCAGTGATGCTGGCTGATAGAATTGATGGGTATAAACGGCAAGAGAAGCGTTTAATTTCTGAATTCAGGAAGCATTTTGGCGTTCCTGTTGACCTATGCAAGGATGAAGAAGTAAATGGGGGAATTGTAAATTGGGTAGAACGCTTCCGTCCAAGAAAATTTGGGAATGTGGTGGATGGGGAAGTGGAGACGTGCAGACAAATTGCTCAGAAAACCGGTATTCTTGTTGATCCTATTTACACTCTAGCTGCTTGGGAAATGGCTACTTTTCTTTCTCAGAAGGGAGCCAAAGCTAATGCAGATCTGGTGGTATTGCTTCATACTGGTGGTACCCTCGGCATGTTTGGACTAGCTCAAAGACTCTTAATCTCTATGGGTAGGGATGATGGGGTCAAAGAGTGGACTATGTCT 1746 43.36 MRQAIPKMAAASSVNTFTTVPNCPADVSRLLRSRRTVLQSEMGASGYFFSATKLRLLHCKTAVAALQNEFSSRKFTDSSQGVQFGGEEFVTRLLARRWALDNPDTKINKVMFSTADTNLHDVPAGHLYLGVDTDICTSNDVSAADYSEQSFYVVRDDLLHPLINGNKARKLDGVLPLIKDNSVTDVRKHLALHVGVVKVHMQLLLVGVFLSEKTSLRFFILRTGHNGKKRDGVLKDLGTFDSVALVPHLLCLPFSPPQANVNEPGRNLFLHTDFLLSAVLCAERGLRSHLLLRGEQPEFLTGYNLMSTIYGNVTYVPRSIYANREKMLKTQADLVAGSSGNILWLDDIFPTSLGKQPCSTTNSVHIDYDFHRMARKHGRRVIVINEGAGDAIALLGIVSLLNYLSQDHLLGKQRAVKFVVDAGTGTTAIGLGLGALCLGLPWEVTAVMLADRIDGYKRQEKRLISEFRKHFGVPVDLCKDEEVNGGIVNWVERFRPRKFGNVVDGEVETCRQIAQKTGILVDPIYTLAAWEMATFLSQKGAKANADLVVLLHTGGTLGMFGLAQRLLISMGRDDGVKEWTMS 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5796041 5802602 - Lsi04G006320.1 Lsi04g00632 660681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00632 582 PANTHER D-CYSTEINE DESULFHYDRASE 2, MITOCHONDRIAL 278 566 - -
Lsi04g00632 582 Gene3D - 362 567 IPR036052 -
Lsi04g00632 582 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED 278 566 IPR027278 -
Lsi04g00632 582 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 278 565 IPR036052 -
Lsi04g00632 582 PANTHER D-CYSTEINE DESULFHYDRASE 2, MITOCHONDRIAL 58 186 - -
Lsi04g00632 582 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED 58 186 IPR027278 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00632 K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] - csv:101217882 452.595
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00027 Lsi-Chr2:339578 Lsi04g00632 Lsi-Chr4:5796041 1.12E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g597 . . . . . . Bma14g01834 . . Cmo18g00719 . Cma18g00731 . Car18g00681 . Cpe09g00557 . Bhi07g01837 . . Lac13g0114 Hepe10g1565 . . Cla05g02619 Cam05g2806 Cec05g2842 Cco05g2874 Clacu05g2810 Cmu05g2658 Cre05g2774 Cone13ag1095 Cone19ag1085 . . Lsi04g00632 Csa05g02255 Chy10g00825 Cme10g00606 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010790 0 3 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00632 Lsi_Chr04 FPKM 2.745833 2.995615 22.633888 27.469685 77.238258 90.830338 83.271172 28.507931 33.307514 35.67598