Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00633 ATGAATCCTCTCTGCTGCATTGCGCCGGTTTCTATTGATCGGGACCGGGCTAATCCGGTTGTTGCGAAATCCCCAACTCACTGTCACTTAGGGCTTGATGCTCCTATTAAGACTTTGAGCTATGGCTCTAAACCCACTTTTTCCGCTCAGGTTTCCTCGGTTGGGACTGAATCGGACAAGCTTTCTGTCTCTGTTAACCATGAAGGGGAAGACTCGGTTACTGAACCTCGGGATACTAAGGGACTTGTTGCCAATGGTGGGGTCAGTGGTACCGTTGCTGGGATTTTGTACAAGTGGGTGAACTATGGGAGAGGTTGGAGGTCGAGGTGGTTCGTGTTGGAAGATGGGGTTCTTTCGTACTACAAGATTCATGGTCCTGATAAGATTTTGATGAGTCCTGCTAGAGAGAAAGATGTTAGGGTGATCGGAGAGGATTCTTTGAGGTATATGAGGAAGGCTAATTGGGGAACTACTCGACTCGGATTGTTGAAGAAGCAATGCAAACCTTTCGGGGAAGTTCATTTGAAGGTTTCTTCAGTTCGTGCTAGTAAATCAGATGATAAAAGGCTTTCCATCTTCACTGGAACAAAAACTCTTCACTTGAGATGCATAACGAAAGAAAACAGAGCTGCTTGGATTGATGCTTTGTTGTCTGCCAAAGATCTTTTTCCCAGAGTGTTATGCAGCAATGATTTTCTTCCATCCCAGGAGGTTGTTGTCTCGACAGAGAAGCTTCGTTCACGACTGTCACAAGAAGGGATTGATGAGACAATCATCAATGACTGCGAATCAATTATGCTCTCTGAACTCTCTGAGATGCAAAACCAGTTGAAAGCTCTACAATATAAACATGTTGCTTTGTTAGATACATTGAGGCGATTGGAGACAGAGAAAATAGAACTGGAAACTACTGTTGTGGATGAAACGAAGGAACGGGAGTCTTGCTGTGGACAAGGGAATAGAAGATTCAGTGATTTCTACTCTGTTATGTCGGAGGGAAGTGCATCTGATTTTGATGGAGAAAATGAGAGTCAAGATGGAGGTGATGTTGAAACAGATGAAGATGATGGAATGTATTTTGATACCAATGATTTTTTGTCTGCAGAAGCTTTGAGAAGTGCTTCCTATCGCAGTAGGGAATCCTCAGGAATTGCCTGTGCATATGACAGTGGTTCTTACTTCTCTGACCATCTGCATGAAGTCGAAAATCAGATAAGGATGGTGAAATATCCATATGTCAAAAGAAGAGAAAGCCTTCCAGATCCAAAGGAGAAAGAGAAGCCTGTTGGCTTATGGTCAATTATCAAAGATAATATTGGAAAGGACTTATCTGGAGTATGTCTACCTGTTTATTTTAACGAGCCACTGTCTTCATTGCAAAAGTGTTTTGAGGATTTGGAATATTCTTACTTGGTCGACCAAGCGTTCGAATGGGGCAAGCAGGGGAATGACTTGATGAGAATTCTAAAGATTGCTGCTTTCGCCGTGTCTGGCTATGCTTCAACAGAAGGTCGACAATGTAAACCATTTAACCCTCTACTTGGAGAAACCTACGAAGCTGATTATCCAGACAAAGGACTTCGTTTTTTCTCGGAAAAGGTAAGTCACCATCCAATGATTGTTGCTTGCCATTGTGAGGGAAGAGGCTGGAAGTTTTGGGCAGACTCCAATCTTAAAGGTAAGTTTTGGGGGAGATCCATTCAGCTTGATCCCGTGGGTGTCCTTACTTTACAGTTTGAGGATGGGGAGACGTTACAGTGGAGCAAGGTCACTACTTCCATTTACAATATCATACTGGGAAAAATTTATTGTGATCACTATGGCACTATGCGAATAAAAGGCAGTGACAAGTACTCCTGCAAGCTCAAGTTCAAGGAACAATCTATCATAGATCGGAATCCACATCAGGTCCATGGATTTGTGCAAGACAATAGAACTGGAGAAAAGGTGGCACTGTTGGTGGGAAAGTGGGATGAGGCAATGTACTACGTGTTAGGAGACCCAACCACAAAGCCCAAGGGATATGATCCAATGACAGAAGCTGTGTTGCTCTGGGAAAGAAACAGATCTGTAGCTAAGACAAGATACAATCTCTCTCCATTTGCAATATCCTTGAATGAACTCACACCGGGTTTGATGGAAATACTGCCTCCAACTGACTCAAGGCTTAGGCCAGATCAAAGACATTTGGAAAATGGAGAATATGAGTTGGCAAACGCAGAGAAGTTAAGACTTGAACAGTTGCAGAGACAGGCTCGGAAGTTGCAGGAGAGAGGATGGCAACCTAGATGGTTTCAGAAGGATGAAGACGGTTGTTACCGTTATTTGGGTGGTTATTGGGAAGCTAGAGACAAAAAGACTTGGGAGGGAATTCCTGATATATTTGGCCAACCAACTGATATGGTCCCATGTTCAGGAGAAGAGTAA 2427 43.39 MNPLCCIAPVSIDRDRANPVVAKSPTHCHLGLDAPIKTLSYGSKPTFSAQVSSVGTESDKLSVSVNHEGEDSVTEPRDTKGLVANGGVSGTVAGILYKWVNYGRGWRSRWFVLEDGVLSYYKIHGPDKILMSPAREKDVRVIGEDSLRYMRKANWGTTRLGLLKKQCKPFGEVHLKVSSVRASKSDDKRLSIFTGTKTLHLRCITKENRAAWIDALLSAKDLFPRVLCSNDFLPSQEVVVSTEKLRSRLSQEGIDETIINDCESIMLSELSEMQNQLKALQYKHVALLDTLRRLETEKIELETTVVDETKERESCCGQGNRRFSDFYSVMSEGSASDFDGENESQDGGDVETDEDDGMYFDTNDFLSAEALRSASYRSRESSGIACAYDSGSYFSDHLHEVENQIRMVKYPYVKRRESLPDPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQAFEWGKQGNDLMRILKIAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHCEGRGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFEDGETLQWSKVTTSIYNIILGKIYCDHYGTMRIKGSDKYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVALLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERNRSVAKTRYNLSPFAISLNELTPGLMEILPPTDSRLRPDQRHLENGEYELANAEKLRLEQLQRQARKLQERGWQPRWFQKDEDGCYRYLGGYWEARDKKTWEGIPDIFGQPTDMVPCSGEE 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5805054 5812123 - Lsi04G006330.1 Lsi04g00633 660682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00633 808 Gene3D - 516 683 - -
Lsi04g00633 808 Gene3D - 727 790 - -
Lsi04g00633 808 Pfam Pleckstrin homology domain 94 216 - -
Lsi04g00633 808 SUPERFAMILY Oxysterol-binding protein-like 425 799 IPR037239 -
Lsi04g00633 808 ProSiteProfiles PH domain profile. 89 221 IPR001849 -
Lsi04g00633 808 MobiDBLite consensus disorder prediction 334 355 - -
Lsi04g00633 808 Coils Coil 277 311 - -
Lsi04g00633 808 SMART PH_update 90 223 IPR001849 -
Lsi04g00633 808 SUPERFAMILY PH domain-like 92 224 - -
Lsi04g00633 808 Pfam Oxysterol-binding protein 431 783 IPR000648 GO:0008289
Lsi04g00633 808 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 1D 2 799 - -
Lsi04g00633 808 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 799 IPR000648 GO:0008289
Lsi04g00633 808 Gene3D - 89 223 IPR011993 -
Lsi04g00633 808 Coils Coil 738 758 - -
Lsi04g00633 808 CDD PH_ORP_plant 92 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00633 K20456 OSBP; oxysterol-binding protein 1 - csv:101204827 1604.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00633 Lsi-Chr4:5805054 Lsi09g00408 Lsi-Chr9:4341826 0 dispersed
Lsi04g00633 Lsi-Chr4:5805054 Lsi07g01319 Lsi-Chr7:19321813 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g595 . . . . . . . Bma15g00230 . . . . . . Sed01g3038 . Cpe01g01580 Bhi07g01839 Tan04g0129 Cmetu09g0131 Lac13g0113 Hepe10g1564 . . Cla05g02620 Cam05g2807 Cec05g2843 Cco05g2875 Clacu05g2811 Cmu05g2659 Cre05g2775 Cone13ag1096 Cone19ag1086 . . Lsi04g00633 Csa05g02254 Chy10g00824 Cme10g00607 Blo06g00836 . . . . . . . . . . Cma04g01792 . Car04g01807 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010393 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00633 Lsi_Chr04 FPKM 14.756614 18.741468 0.487006 0.687016 0.761856 0.413619 0.440208 0.0 0.0 0.0