Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00634 ATGGACCCCGCTGCTTCTCGCCCCGCTGTAGTAATCGACAATGGAACCGGATATACTAAAATGGGGTTCGCCGGCAATGTAGAGCCATGTTTTATTGTTCCTAGTGTAGTTGCAGTTAACGAATCGTTCTTAAACCAATCGAAAAACTCGTCAAAAGCAAATTGGCTTGCGCAGCATAATGCTGGTGTAATGGCAGATCTTGATTTCTTCATTGGAGATGAGGCGCTTGCGAAGTCGAGATCTAGTAGTACTTATAATCTTAGCTATCCAATTCGAAATGGTCAGGTTAACAATTGGGACGCCATGGAGCGGTTCTGGCAGCAGTGTATATTCAATTATTTGCGGTGTGATCCGGAGGATCATTATTTTCTTTTGACCGAGAGCCCCCTTACGGCACCGGAGAGTCGAGAGTATACGGGTGAAATAATGTTCGAGACATTCAATGTTCCGGGGCTTTATATTGCTGTCAATTCCGTGCTTGCTCTTGCTGCTGGTTATACTACATCTAAGTGTGAGATGACAGGGGTTGTAGTGGACGTTGGAGATGGGGCTACTCATATTGTGCCTGTTGCAGATGGCTACGTTATTGGAAGCAGCATTAAGTCAGTTCCCATTGCTGGCAAAGACGTGACTCTCTTTGTCCAACAGCTCATGAAAGAAAGAGGAGAAAATGTACCACCCGAGGACTCTTTTGAAGTGGCCCGAAAAGTGAAGGAAATGTATTGCTATACCTGTTCTGACATTGTCAAGGAGTTCAATAAGCATGATAAGGAGCCAGGAAAGTATCTAAAGCACTGGAAGGGTATTAAACCCAAGACTGGCGCACCATATTCCTGTGATATTGGCTATGAACGATTTCTTGGTCCGGAGGTGTTCTTCAATCCCGAAATTTATAGCAGTGAGTTTACCACCCCTTTGCCTGCTGTAATAGACAGGTGTATCCAGTCTGCTCCAATTGATACTCGAAGAGCGTTGTACAAGAATATAGTACTATCTGGAGGTTCAACAATGTTCAAGGACTTCCATAGGAGGTTACAAAGAGACTTGAAGAAGCTCGTGGATGCCCGGATCCTTGCTTCTGAAGCTAGATTAGGAGGAGAAATAAAAGTGAGAACTGTTTCGCATCCAGTGGAAGTCAATGTTGTTAGCCATCCCATCCAGAGATTTGCCGTCTGGTTTGGAGGCTCTGTTCTTGCATCAACTCCCGAGTTTTTTGCGGTATGCATGCTAAATCTTTTTTCATATGCTAATTTACAATCCTTTTCGGGAAGGATATCAACCATGGTACCTGTTAGGCTTGTCATACAAAAGCAGAATATGAAGAGTACGGTGCAAGCATATGCCGCACAAATCCTGTTTTCAAGGGAATGTACTGATGCAAAGATCCTTGAGCTTTGGCCTTTGGGGTGGTATAGTCCCCGACTTATGTTGGATCAGATGCTTTGCCGTTTCCCCTTGAACGTGCACCTCGATTCGGTTCGGTTTGGTTCAGTTTCATGCTTTGCAGCCTTTCATAGGTGTACATGGGTGGTGTAA 1536 44.66 MDPAASRPAVVIDNGTGYTKMGFAGNVEPCFIVPSVVAVNESFLNQSKNSSKANWLAQHNAGVMADLDFFIGDEALAKSRSSSTYNLSYPIRNGQVNNWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATHIVPVADGYVIGSSIKSVPIAGKDVTLFVQQLMKERGENVPPEDSFEVARKVKEMYCYTCSDIVKEFNKHDKEPGKYLKHWKGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSEFTTPLPAVIDRCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKLVDARILASEARLGGEIKVRTVSHPVEVNVVSHPIQRFAVWFGGSVLASTPEFFAVCMLNLFSYANLQSFSGRISTMVPVRLVIQKQNMKSTVQAYAAQILFSRECTDAKILELWPLGWYSPRLMLDQMLCRFPLNVHLDSVRFGSVSCFAAFHRCTWVV 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5820813 5825586 + Lsi04G006340.1 Lsi04g00634 660683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00634 511 PANTHER ACTIN 7 411 IPR004000 -
Lsi04g00634 511 Gene3D Actin; Chain A, domain 4 205 303 - -
Lsi04g00634 511 SMART actin_3 7 423 IPR004000 -
Lsi04g00634 511 Gene3D - 10 409 - -
Lsi04g00634 511 CDD NBD_sugar-kinase_HSP70_actin 10 206 - -
Lsi04g00634 511 SUPERFAMILY Actin-like ATPase domain 173 408 IPR043129 -
Lsi04g00634 511 SUPERFAMILY Actin-like ATPase domain 7 177 IPR043129 -
Lsi04g00634 511 PANTHER ACTIN-RELATED PROTEIN 3-LIKE 7 411 - -
Lsi04g00634 511 Pfam Actin 7 408 IPR004000 -
Lsi04g00634 511 Gene3D - 158 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00634 K18584 ACTR3, ARP3; actin-related protein 3 - csv:101205075 805.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00634 Lsi-Chr4:5820813 Lsi10g00709 Lsi-Chr10:9906107 1.40E-67 dispersed
Lsi04g00634 Lsi-Chr4:5820813 Lsi01g01130 Lsi-Chr1:9427824 6.78E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g594 . . . . . . . Bma15g00231 . Cmo18g00718 . Cma18g00730 . Car18g00679 Sed06g1711 Cpe09g00558 Cpe01g01581 Bhi07g01840 Tan04g0128 Cmetu10g1498 Lac13g0112 Hepe10g1562 . . Cla05g02622 Cam05g2810 Cec05g2846 Cco05g2877 Clacu05g2814 Cmu05g2662 Cre05g2778 . . . . Lsi04g00634 Csa05g02253 Chy10g00822 Cme10g00608 Blo06g00835 . . . . . . . . . . Cma04g01794 . Car04g01808 . . . . . . . . . . . . . . . . . . . Chy09g00409 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007687 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00634 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0