Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00635 ATGGAAACTCATCTTCTACTAAGTTTGGGCACTGCAAAGCCTCTGGCAGTGCCCATGGATGCCACGACAAGCGAAACGGCGGCTATACAGTTCCATAGCATTCCTGATCAATCAGTTTCTGCTATTGTCACCAATGCAACATCGACATTTCCACAATCGAAACGACATTGTCTTGGGGAATCCGACCCGGGTGAATTCCCCTTAGCTGCCAATCCCTCCATTGTTCTTCATGTCCTGACGGCATGTAACTTGGATCCTCAAGACCTTGCAAAGTTAGAGGCAAGATCTTTCGTTTCCTTTGCAACATGTTCATTCTTTAGACAGCCTGCAAACTTTGCTCCTGACTATGAATTGTCGATATCGGAGCTTGCTGCATTAGATATGTGCCAAAAGAGGGCCATATTCAAACCTATGACAGCAGAACAGCATCAAGCATTGAAGCAAAGATGTGGTGGTTCCTGGAAACTGGTATTGAGGTTTTTAGTGGCTGGAGAAACATGTTGCAGAAGGGAAAAATCCATGGCAATAGCAGGACCTGGTCACAGCATCGCAGTCACGTCAAAAGGAGCTGTTTACTCCTTTGGATCCAACAGCTCTGGACAGCTTGGACATGGTACCACTGAAGAGGAATCACGGCCTCGCCTTATCAGATCCCTGCAAGGAATTCGAATAATTCAGGCAGCAGCAGGGGGCGGGAGGACAATGTTAATCAGCGACGCTGGGCATGTTTATGCATTTGGCAAGGATTCATTTGGTGAAGCTGAGTATGGAGCTCAAGGAGCTCAAGTTATTACTACACCAAAGGTGGTCGAATCCCTGAAGGATATATTTGTGGTGCAAGCTGCAATTGGAAATTTCTTTACTGCTGTTTTATCAAGAGAAGGTAGGGTGTACACATTTTCTTGGGGGGCTGACAGTAGGCTCGGTCATCATACCGAACCGAATGACTTGGAACCACGACCCCTGATGGGGGCATTAGAAAACATTCCAGTTGTTCAAATTGCTGCTGGATATTGCTACCTTCTTGCTCTAGCTTGTCATCCTAGTGGCATGTCAGTATACTCAGTTGGGTGTGGACTGGGCGGGAAGCTCGGTCATGGTTCAAGGACTGATGAGAAACAGCCACGACTTATTGAACAATTTCAGCTTCTGAATCTCCAGCCAGTCGTAGTCGCTGCTGGTGCTTGGCACGCAGCTGTTGTAGGTCGCGACGGTCGAGTTTGTACATGGGGTTGGGGCCGATATGGGTGCCTGGGTCATGGAAATGAGGAATGTGAATCTTCCCCTAAGGTGGTGGAAGCATTAAGCAATGTTAAAGCAGTTCATGTTGCTACAGGAGATTATACAACATTCGTAGTATCTGATGATGGCGACGTGTATTCTTTCGGTTGTGGAGAATCCGCTAGTCTCGGGCATAATATCGCCGTGCCCGAGGAACAGGGGAATCGGCAACCGCACGTTTTAAGCCCAGAACTAGTCAGGTCTCTGAAGCAAATTAGCGAGCGGGTAGTTCAGATTAGCCTCACTAATTCAATTTACTGGAATGCACACACCTTTGCACTGACCGAGTCAGGGAAGTTGTATGCATTTGGTGCTGGAGACAAAGGGCAGCTTGGGGTCGAACTTCTGGCAAATCAAACCGAAAGGGGAAACCCAGAGCGGGTTGACATTGATCTAAATTAA 1683 47.59 METHLLLSLGTAKPLAVPMDATTSETAAIQFHSIPDQSVSAIVTNATSTFPQSKRHCLGESDPGEFPLAANPSIVLHVLTACNLDPQDLAKLEARSFVSFATCSFFRQPANFAPDYELSISELAALDMCQKRAIFKPMTAEQHQALKQRCGGSWKLVLRFLVAGETCCRREKSMAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTEEESRPRLIRSLQGIRIIQAAAGGGRTMLISDAGHVYAFGKDSFGEAEYGAQGAQVITTPKVVESLKDIFVVQAAIGNFFTAVLSREGRVYTFSWGADSRLGHHTEPNDLEPRPLMGALENIPVVQIAAGYCYLLALACHPSGMSVYSVGCGLGGKLGHGSRTDEKQPRLIEQFQLLNLQPVVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECESSPKVVEALSNVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNIAVPEEQGNRQPHVLSPELVRSLKQISERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGVELLANQTERGNPERVDIDLN 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5827505 5831261 - Lsi04G006350.1 Lsi04g00635 660684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00635 560 PRINTS Chromosome condensation regulator RCC1 signature 452 473 IPR000408 -
Lsi04g00635 560 PRINTS Chromosome condensation regulator RCC1 signature 297 311 IPR000408 -
Lsi04g00635 560 PRINTS Chromosome condensation regulator RCC1 signature 394 412 IPR000408 -
Lsi04g00635 560 PRINTS Chromosome condensation regulator RCC1 signature 241 257 IPR000408 -
Lsi04g00635 560 PRINTS Chromosome condensation regulator RCC1 signature 191 207 IPR000408 -
Lsi04g00635 560 PRINTS Chromosome condensation regulator RCC1 signature 281 297 IPR000408 -
Lsi04g00635 560 Pfam Regulator of chromosome condensation (RCC1) repeat 456 507 IPR000408 -
Lsi04g00635 560 Pfam Regulator of chromosome condensation (RCC1) repeat 188 237 IPR000408 -
Lsi04g00635 560 Pfam Regulator of chromosome condensation (RCC1) repeat 294 343 IPR000408 -
Lsi04g00635 560 Pfam Regulator of chromosome condensation (RCC1) repeat 353 401 IPR000408 -
Lsi04g00635 560 Pfam Regulator of chromosome condensation (RCC1) repeat 404 453 IPR000408 -
Lsi04g00635 560 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 189 240 IPR000408 -
Lsi04g00635 560 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 19 560 - -
Lsi04g00635 560 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 404 IPR000408 -
Lsi04g00635 560 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 525 560 IPR000408 -
Lsi04g00635 560 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 457 524 IPR000408 -
Lsi04g00635 560 SUPERFAMILY RCC1/BLIP-II 173 473 IPR009091 -
Lsi04g00635 560 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Lsi04g00635 560 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 19 560 - -
Lsi04g00635 560 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Lsi04g00635 560 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 347 IPR000408 -
Lsi04g00635 560 Gene3D - 348 559 IPR009091 -
Lsi04g00635 560 Gene3D - 172 347 IPR009091 -
Lsi04g00635 560 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 241 294 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00635 - - - csv:101205316 1000.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00235 Lsi-Chr3:2939649 Lsi04g00635 Lsi-Chr4:5827505 2.23E-09 dispersed
Lsi04g00635 Lsi-Chr4:5827505 Lsi04g01323 Lsi-Chr4:21028025 2.31E-15 dispersed
Lsi04g00635 Lsi-Chr4:5827505 Lsi06g00572 Lsi-Chr6:7446725 1.99E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00635 Lsi_Chr04 FPKM 0.0 0.0 14.242746 15.374969 94.931053 97.563957 81.859207 0.0 0.0 0.0