Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00640 | ATGTCTGAGAATCATGATCCAGAGCAGGCGCTGCAGAGTTCAGGAAGTGGAGCTGAAGATGGAGCTGAAGGGATGGAAATTGCGGTCAATGTTAATGTTGGGGAGTCATCCTCTGAGATTGCCGCGGACACTGTTTCGGAGAATGACTCCGCTTTGCAGTCCTCTGAATTGTCCACTGGATTTTCCCCTTCTGAACCCAACCAGGAATCAACGTTGTCGCCAGTGGGTCCTCCTACCGAAGGTGCAGAGAACTCAGGACAAGATGGCCCTGATGGTACTGTAGTAGTCGAAGATGCTGGAAAAGAAGATATGTTTGTGGACTGCCCGGACGAATTAGTTGGCAATGTTGATAGCAGAGAAGTAGTAGCAGCTGCTGAAACTGAAGGTAGTTTGACGGAGGAAACACCTTCTGATGTGCAACAGGAATTACAGTATGAGGTAGAAAAGGTTTCTCTGATGCATGAGGTGGAAAATACGAGGGCCACTCTGAATAAGACCATTTTTGAGAAAGAAAATGTCATACACGACTTTGAGGAAGAAAGAGAGGCTTTTGTGCAAGAACTTCTTATCATTTGTCGCCAACTCAAGACTGCTACTAATCAACCGTCGTTGCTCAACATTACTGGCAGTCAGTTGAATGGAATCGAGCACGTGGAAGAAAACACTATGGGTACTAATACCACATCGAAAGATCTGGTAAATGAATGCTCACAATTGGTTAATAGGACTTTAGATGAACGGTTGCAGTACGAAGCTACTATAGGAGAACTCCGTAATAACCTTTTAATGAAGGATCAAGAGATTGAATATCTGAATGCAAAGGTTGTTGAATTTTCGGTGTCTGATGAAGTTGTTCGTTCTTATGCAAATTCAATTGAAGATTCTATGAAAGTTTCATCAGAAAAGGAGAGGGATATGGAAGCTACATTAGACAGAGTGTTAGCTTCTCTCAATTCAGTATTGAATCAGCAACATCTTCTTGACGATTCTATATCAGAAAAAACACTTCATGTCGAAAGAAGTACTTCTTTGTTAATTGATAATTATAACAAAATCCTTCTGGATATCAATCAACTCCAAAAAGGTTTGTCTGGGGCAGAGTCAGACATCAACTTTACAGAAGTTGGAACAATTTTGGCCTCTGCTCATGATGAGTTAATTGAGCTCAAGGCTAAAGAGGTAAGCAATGTTGAAAAAATATATCATCTGGAAGATGAAAATAGAAGATTGGCAGATGAGCTAGACAAGTGCAGGTTGACAGCTGAGACTGTTAATGGAGAACTTGAAAAGGCAAAGAGTGAACTGGAGCAGGAAAGGATAAGGAGTGCTAATACCAAAGAAAAGTTAACAATGGCTGTGACAAAAGGCAAGGCATTAGTACAGCAACGTGATGCATTAAAGCAATCTCTAGCTGAAAAAGGTCACGAACTTGAAAAATATTCTGTCGAACTACAAGAGAAATCAATTGCTTTGGAGGCTGCCGAACTAATTAAGGTTGACTTGGCTAAAAATGAAACTTTAGTTGCATCACTTCAGGAAAATCTGTTGCAAAGGAATATGGTCCTCGAAAGTTTTGAGGATATTATATCTCAGCTTGAAGTTCCTAGGGAACTTAAATCAATGGACAGTATGGAAAGACTCAAGTGGCTTGTGGATGAGAAGAAAGTTCTGGAGGCTATTTTATTGGAGTTTTATAAATTAAAAGATACTTTAAACTTATCTGATTGGCCAGATTTGATTGCACCTTATGACCTGAAATCTTCTGTCAGTTGGCTTAAGGAATCATTTTTTCAGGCTAAAGATGAAATAATGATCTTGCAAGATGAACTTGCTAAAACAAAAGAAGCAGCACAGGGAGAGATTGACCGCATAAGTGCATTACTTTTAATCAAATTACAGGAAAAGGACCATCTCCAGGAGCAGTTGGATGATTTGTTAAACAAATACGAAGAAGTCAGGATAAAAGAGCACCAGACTTCGTTGGAGAAAGCTCAAGTCATAAAAATGTTACAAGAAGAATCTGGAGTAACAACAGATGATGGAGGGATTGGTGAAACTTCGTTGGATTTGAACTTGCTTGTTTACAGATGCTTTCAAAGGATAAAAGAACAGGCTTGTGTTTCTGCTGAAATCTCTGGTGAATATGTGGAATCTTTTGAAAAGGTTCATGCTCTTTTGTACGTCAGTCATCAGGAGTTGATGCTCTATGATATAATTCTGGAAGAGGAGTCTTCTAATTTGAGTAATTGCTCAACTAGGTTAAGATCAATATCTGAAGAACATAGAGAAATGAAAGAGGAAAATGACTCTTTGCAGAGGGATCTTCAGAGATCAGAGGAGAAATATGCCATGCTAAGGGAAAAGTTGTCCTTGGCAGTTAAGAAAGGCAAAGGACTGGTTCAGGACAGGGAAAATATGAAGAGTCTCTTGGATGATAAGAACATAGAAATAGAGAAGTTGAAACTACAATTAGGTAGTCTAGAATCAACAGTTGCTGATTGCAGAAACCAAATCAATTTGTTGTCTACTGATACACAACGCATTCCGGAGTTGGAGTCTGAACTTGGTATCTTGAAGGACAAATGCAATCAATATGAGCAGTTCTTGTTGGAGAGCAATAATATGTTGCAGAAAGTAATTGAATCAATTGATGGAATTGTTCTTCCCATTAATATTGTTTTTGAAGAGCCTATAGCTAAGTTGAAGTGGATTGCAGAATACATTGGGGAATCTCATGATGCTAAGATACGTACTGAACAAGAATTGGAGAATGTTAAAGAGGAATCAAGTACTATGGAAAGTAAATTAGTAGATGCTTTAGCTGCTATGAAATCATTGGAAGATGCATTATCATCTGCTGAGAACAACATTGTTCAACTTTCTAAGGAGAAAAGGGAACTAGAATCTAGTAAGACACGCATTGAAAAAGAATTACAGAAAGCATTAGATGAAGCCTATTCCCAGTCCAGCTTGTCTGCGGAGGCTTCTTTATCCATGAGCCTACTTCAAGAGTCATTATTAGTGGCAGAAAATAAAATATCTGTGCTTGTCAAAGAGAAAGAAGAAGCTGAAGTCTGTAAGGTCACCGCAGAGATAGAGTCTAAGAAAGTCAAGGAGCAAGTGGCTGTTCAGACAGATAAATTGGCAGAGACCCAAGGAACTGTAAACACATTAGAAAAGACGTTGACTGAGCTTGAGACCAATGTTGCTTTGCTGACGGAACAGAATGCTGAAGCACGAAGTGCTATAGAGAAGCTAGAGACTGAGCGAAAGATATTGCAAGAGGAAGTCAGCTCTCAAGCGAGCAAAGTTGTTGAGGCAGTGGAAACAAGAAAATCCTTGGAAGATTTATTATTCAAGGCAGAAAGTAAAATTTCTATAATTGAAGGAGAGAGGAAAATTTCTGAAAATGAGATATTTGCTCTAAATTCCAAATTAAATGCATGCCTGGAAGAGTTGGCCGGGACAAATGGCAGCTTACAGAGCAGATCTGTAGAGTTTGCAGGCTACCTCGATGATCTTCATAAGTTTATTGCAGACGAGACATTGTTGACTGTGGTGACAGGATGCTTTGAGAAGAAGCTTGTCAGTCTAAGAGAGATGGATATCATTTTGAAGAACACCAGGGATTGTCTTGTTAACAGCGGCATAATAGATTCTCATAATCACCATGCTGTTAAGGATCTGAATGTTATGGAAACCCACTCTCATGGAAAGCTCCTTGATTTTTCTGTTGAAAGTGAAAGTTGTAAGGTGGTTGTTGAAGATGATGTCGGTAATATTTCATCGTCTTTTAGAGAGATTATGGAAGGAATCTGGTTAAAGAACAAAAAGCTCACCGATTATTTTGAAGGTTTCTCCTCTTCAATGGACGGGTTTATTGCTGATCTGTTAAAAAATGTGGAAGCAACAAGGGAGGAAATAGTTCTTGTGTGTGGACACGTCGAGTCCTTGAAAGAGATGGTGAAGAATCTCGAAATGCATAAACAGGAACAAGAAATTGCCAGAGTGATGCTGGAAGATGATGTTTCACTTCTACTGTCTGCTTGTGTTGACACAACAAAAGAACTTCAGTTTGAAATGACCAACGATCTACTTCTACTCCACTCTATTCCCGAACTTGACAACTTGAAGGATACCATACCCATGGAAAGTAGTGAGACTAGTGGAACTTTAGCTGCAGAGTCAAAATCATCTAGTAGCAAATCAGCTGCCGCTGCAGAACAATTATTATCTGCTAGTAGAAAAGTTCGATCTATGTTTGAACAGTTTGAGAGCACCAGCAAGGTTGCAGCTGGTAGAATTCAAGATATGAAGCATATATTGGAAATAACTGAGGCAACTACTGAAAAAATTAGAGAGGAAAAGGACTTGAACCAAAATATGGTAGTTAAGTTGGAGACTGATTTACAACTATTACAGAGTTCCTGTGGTGAACTTAGGCGTCAACTGGAGGCTTGTCAAGCAAATGAAGAAAAGTTAAAAGAAAGGGAAGCTGAAGTTTCATCATTGTATAATAGTATGCCGGTGAAAGAACAAGAGGCAGAAAACTGCGTTTTGTCAACAATGCAAATGAAAGCCCTCTTTGAGAAAGTTAGAAGGGTTGAGATCCCTTTGCCAGAATCAGAACCCCTAGATCTGGAAAAATATGATTCACCTGATGTAAAGAAGCTCTTTTACCTAGCTGATTATGTTTCTGAGTTACAGAATCAGCTCAACTTATTATCTCATGACAAGCAAAAGCTGCAGTCTACAATGACTACACAAATGCTTGCATTTGAACAGCTGAAAGAGGAGGTTGATAGAGCATCGAGGAATCAGCTTGATTCAGAGAAGATGAATAAAGATCTCTCGGAGGTTTCTTTTTCTTTGGTACAAATGATTAGTTTGTTGGATAGTAACTACAGTGGAGATTCGAAGTCAGATGGCTTGAAAGGACTAGTAACAACTTTAGGAAAGCAGATTCTGGATATGCTTTCAGAATCTGAAAATTCAAAAACCAAATTTGAGGAACTGAGTAAGAAGTTAATAGGGAGCCAAAAAGTCGTGGATGAACTAACGACCAAGAATAAGCTACTTGAAGAGTCACTTCAAGGGCGGACATCTCAACCAGAGATCATCAAAGAAAGGAGCATCTTTGAAGCACCTTCCTTTCCTTCTGGATCAGAGATATCAGAGATAGAAGATGCGGGACCAGCTGGGAAAAGTGCAATGCCACCTGTTCCATCAGCCTCAGCTGCCCATGCACGAACTTTGCGAAAAGGTTCAACTGACCATCTTGCAATTGACGTAGAAACAGAATCTGATCGTTTAATAGAAAAGAGCATGGAAAGTGATGAAGACAAAGGTCATGTGTTCAAATCACTCAATACATCGGGTCTCATCCCAAGACATGGAAAACATATTGCAGATCGAATTGATGGAATTTGCTCAAATTCTCTTCAATTATCCATTTCCTCAAAACTGCAACATTCTCAGGCTTCAAATATGACATCAGCTCAGAAGGGTCCATTTTTGCCCAAATTTGGTGAGTGGGATGAAAAAAATCCTGCTGCAGCTGAAGGATTTACAGTGATTTTCGACAGGGCACGAGATAATAAGAAGAATGGAGGAGGAACTGGAACTCCAAATAATGCGGCGTCTACCACCCATGAAAACATACATCTTCCTTCCACTAATTCTATTGCCATGGATTTCCGGTGCTACATGTGCCACATGGGGCCTCGGTGGATTATTCCAATCATGTCTCTTCATATCCTATATGTTGCTACTTTGATTGTACTTACATGGGCTGTTCGTCATATAGAGTTCAGATTCGATGAACTTAGAGATCTGTGGAAGGGAATAATAGTCTCAGCATCTTCAATTGGAGTTTGGGTTTCTGCCTATATTACTAATGAAATTCATGAAGAGATCTTAGGACTCCAGGTTGCCTCTAGATTTCTGCTATTAGTCACGGCAAGTATTCTTGTGCTGACCTTCTTCTCTATCTCAAGCTCACAACCACTGCTTTCTCAAATCAGTTTGAGAAAAAGGGAAGCACTTGAATATGACTCAATGGGTCATGCTCTGGGCATACCAGATAGTGGATTGTTACTACAAAGGGAACCAGAAACAACCATAGATCCTAATGAACCACTGGAGAAATTACTTCTGAACAAAAGATTTCGTCGGTCTTTCATGGCTTTTGCTGACAGTTGCTTAGCTGGGGAGAACGTGCACTTTTATGATGAAGTGCATGAGCTAGGAAAACTGCCTTTGGACGACCCTGTGAGAAGAATCTATATGGCAAGACATATAATTGACAACTACATAACACCAGGTGCCACAATGGAGGTGAACATTTCTCACCGATGCCGTCAAGAGATTTTGACGACTTCTGATCTGGCTGATCCCAATCTCTTCAATAACGCACTAAATGAGCTGATACAGTTGATAAAGATGTTAAAAGAAGAAACAAGTATGAGATCAAATGGGCGAGACCTTGAACAGATAGCGAGTTGGAACCTCTCTCCTAGATTGAGTTCTGTGCAAGGCGCTGATGACCCTTTCCACCAAGAACAATTTCCAAAGGGCTCTGGCCATGATAGTACTCACGACTCAGATCACTAA | 6612 | 39.84 | MSENHDPEQALQSSGSGAEDGAEGMEIAVNVNVGESSSEIAADTVSENDSALQSSELSTGFSPSEPNQESTLSPVGPPTEGAENSGQDGPDGTVVVEDAGKEDMFVDCPDELVGNVDSREVVAAAETEGSLTEETPSDVQQELQYEVEKVSLMHEVENTRATLNKTIFEKENVIHDFEEEREAFVQELLIICRQLKTATNQPSLLNITGSQLNGIEHVEENTMGTNTTSKDLVNECSQLVNRTLDERLQYEATIGELRNNLLMKDQEIEYLNAKVVEFSVSDEVVRSYANSIEDSMKVSSEKERDMEATLDRVLASLNSVLNQQHLLDDSISEKTLHVERSTSLLIDNYNKILLDINQLQKGLSGAESDINFTEVGTILASAHDELIELKAKEVSNVEKIYHLEDENRRLADELDKCRLTAETVNGELEKAKSELEQERIRSANTKEKLTMAVTKGKALVQQRDALKQSLAEKGHELEKYSVELQEKSIALEAAELIKVDLAKNETLVASLQENLLQRNMVLESFEDIISQLEVPRELKSMDSMERLKWLVDEKKVLEAILLEFYKLKDTLNLSDWPDLIAPYDLKSSVSWLKESFFQAKDEIMILQDELAKTKEAAQGEIDRISALLLIKLQEKDHLQEQLDDLLNKYEEVRIKEHQTSLEKAQVIKMLQEESGVTTDDGGIGETSLDLNLLVYRCFQRIKEQACVSAEISGEYVESFEKVHALLYVSHQELMLYDIILEEESSNLSNCSTRLRSISEEHREMKEENDSLQRDLQRSEEKYAMLREKLSLAVKKGKGLVQDRENMKSLLDDKNIEIEKLKLQLGSLESTVADCRNQINLLSTDTQRIPELESELGILKDKCNQYEQFLLESNNMLQKVIESIDGIVLPINIVFEEPIAKLKWIAEYIGESHDAKIRTEQELENVKEESSTMESKLVDALAAMKSLEDALSSAENNIVQLSKEKRELESSKTRIEKELQKALDEAYSQSSLSAEASLSMSLLQESLLVAENKISVLVKEKEEAEVCKVTAEIESKKVKEQVAVQTDKLAETQGTVNTLEKTLTELETNVALLTEQNAEARSAIEKLETERKILQEEVSSQASKVVEAVETRKSLEDLLFKAESKISIIEGERKISENEIFALNSKLNACLEELAGTNGSLQSRSVEFAGYLDDLHKFIADETLLTVVTGCFEKKLVSLREMDIILKNTRDCLVNSGIIDSHNHHAVKDLNVMETHSHGKLLDFSVESESCKVVVEDDVGNISSSFREIMEGIWLKNKKLTDYFEGFSSSMDGFIADLLKNVEATREEIVLVCGHVESLKEMVKNLEMHKQEQEIARVMLEDDVSLLLSACVDTTKELQFEMTNDLLLLHSIPELDNLKDTIPMESSETSGTLAAESKSSSSKSAAAAEQLLSASRKVRSMFEQFESTSKVAAGRIQDMKHILEITEATTEKIREEKDLNQNMVVKLETDLQLLQSSCGELRRQLEACQANEEKLKEREAEVSSLYNSMPVKEQEAENCVLSTMQMKALFEKVRRVEIPLPESEPLDLEKYDSPDVKKLFYLADYVSELQNQLNLLSHDKQKLQSTMTTQMLAFEQLKEEVDRASRNQLDSEKMNKDLSEVSFSLVQMISLLDSNYSGDSKSDGLKGLVTTLGKQILDMLSESENSKTKFEELSKKLIGSQKVVDELTTKNKLLEESLQGRTSQPEIIKERSIFEAPSFPSGSEISEIEDAGPAGKSAMPPVPSASAAHARTLRKGSTDHLAIDVETESDRLIEKSMESDEDKGHVFKSLNTSGLIPRHGKHIADRIDGICSNSLQLSISSKLQHSQASNMTSAQKGPFLPKFGEWDEKNPAAAEGFTVIFDRARDNKKNGGGTGTPNNAASTTHENIHLPSTNSIAMDFRCYMCHMGPRWIIPIMSLHILYVATLIVLTWAVRHIEFRFDELRDLWKGIIVSASSIGVWVSAYITNEIHEEILGLQVASRFLLLVTASILVLTFFSISSSQPLLSQISLRKREALEYDSMGHALGIPDSGLLLQREPETTIDPNEPLEKLLLNKRFRRSFMAFADSCLAGENVHFYDEVHELGKLPLDDPVRRIYMARHIIDNYITPGATMEVNISHRCRQEILTTSDLADPNLFNNALNELIQLIKMLKEETSMRSNGRDLEQIASWNLSPRLSSVQGADDPFHQEQFPKGSGHDSTHDSDH | 2203 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 5869847 | 5885985 | - | Lsi04G006400.1 | Lsi04g00640 | 660689 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00640 | 2203 | Coils | Coil | 1565 | 1585 | - | - | |
| Lsi04g00640 | 2203 | SMART | RGS_3 | 2046 | 2149 | IPR016137 | - | |
| Lsi04g00640 | 2203 | Coils | Coil | 1048 | 1103 | - | - | |
| Lsi04g00640 | 2203 | MobiDBLite | consensus disorder prediction | 1717 | 1760 | - | - | |
| Lsi04g00640 | 2203 | MobiDBLite | consensus disorder prediction | 1381 | 1400 | - | - | |
| Lsi04g00640 | 2203 | Coils | Coil | 1463 | 1500 | - | - | |
| Lsi04g00640 | 2203 | PANTHER | BNAA09G28150D PROTEIN | 79 | 971 | - | - | |
| Lsi04g00640 | 2203 | PANTHER | BNAA09G28150D PROTEIN | 1139 | 1810 | - | - | |
| Lsi04g00640 | 2203 | SUPERFAMILY | Regulator of G-protein signaling, RGS | 2047 | 2147 | IPR036305 | - | |
| Lsi04g00640 | 2203 | Coils | Coil | 915 | 984 | - | - | |
| Lsi04g00640 | 2203 | MobiDBLite | consensus disorder prediction | 2174 | 2203 | - | - | |
| Lsi04g00640 | 2203 | MobiDBLite | consensus disorder prediction | 1 | 95 | - | - | |
| Lsi04g00640 | 2203 | Gene3D | - | 2038 | 2157 | IPR044926 | - | |
| Lsi04g00640 | 2203 | ProSiteProfiles | RGS domain profile. | 2046 | 2147 | IPR016137 | - | |
| Lsi04g00640 | 2203 | PANTHER | - | 79 | 971 | - | - | |
| Lsi04g00640 | 2203 | SUPERFAMILY | Tropomyosin | 919 | 1160 | - | - | |
| Lsi04g00640 | 2203 | Coils | Coil | 747 | 795 | - | - | |
| Lsi04g00640 | 2203 | Coils | Coil | 1593 | 1613 | - | - | |
| Lsi04g00640 | 2203 | MobiDBLite | consensus disorder prediction | 31 | 80 | - | - | |
| Lsi04g00640 | 2203 | Pfam | Regulator of G protein signaling domain | 2047 | 2147 | IPR016137 | - | |
| Lsi04g00640 | 2203 | Coils | Coil | 1315 | 1342 | - | - | |
| Lsi04g00640 | 2203 | Coils | Coil | 803 | 837 | - | - | |
| Lsi04g00640 | 2203 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Lsi04g00640 | 2203 | Coils | Coil | 628 | 655 | - | - | |
| Lsi04g00640 | 2203 | Pfam | Cleavage site for pathogenic type III effector avirulence factor Avr | 1834 | 1868 | IPR008700 | - | |
| Lsi04g00640 | 2203 | PANTHER | - | 1139 | 1810 | - | - | |
| Lsi04g00640 | 2203 | Coils | Coil | 414 | 448 | - | - | |
| Lsi04g00640 | 2203 | MobiDBLite | consensus disorder prediction | 2188 | 2203 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi04g00640 | Lsi09g00708 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00640 | Lsi-Chr4:5869847 | Lsi04g02199 | Lsi-Chr4:29037942 | 5.99E-11 | dispersed | |
| Lsi04g00640 | Lsi-Chr4:5869847 | Lsi05g00505 | Lsi-Chr5:6340681 | 7.93E-15 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00640 | - | - | csv:101218359 | 2823.11 |