Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00642 ATGGGGTTTCCTCTTTTTTGGGTTTTGATTCTTCTTCTCGTCGTTTCTTCTGTCCATTGTCAGGTTAAAGAGTTCATCAGTATAGATTGTGGAGGGACAAAGAATTTCACCGACCCAGTTACAGGGCTAGCATGGATTTCCGATGCCGGGATTATGAACGCCGGTGGGTCATCGCCGGTGGAAAACCCAAATGGAAACTTGATGCAGTACCAAACACGGCGGGACTTTCCAATCGATGATAAGAAGTACTGTTACACTTTGAAAACAGAGGAAAGAAGAAGGTATTTGGTTCGAGCAACTTTTCAATATGGGAGTTTGAAGAATGAAGAAACTTACCCTAAATTTCAGCTCTACTTGGATGCAACTAAGTGGTCAACTGTAACCATTTTCGATGCTTCGAGAGTTTATGTGAAGGAGATGATCATCAGAGCACCTTCAAATTCATTTGATGTTTGCATATGCTGTGCAACTACTGGTTCTCCATTCATATCCACTCTTGAGCTTCGCCCTTTTAATCTTTCAATGTATGCAACAGATTTTGAAGATAATTTCTTCTTGGAGGTTGCTGCTAGAGTGAATTTTGGTGCTCTAACCAAGGATGTGATAAGGTACCCAGATGATCCATATGACAGAATTTGGGATTCAGACCTTGAGAAGAGGCAGAATTATCTTGTGGGGGTGGCTCCAGGGACAGAAAGAATCAGCACTTTGAACAATATTAATGTAATGACAAGAGAATATCCACCGGTTAAAGTGATGCAGACTGCAGTTCTTGGCACAAAAGGAGTGCTCAGCTACAGGTTGAATTTGGATGATTTTCCTGCCAATGCAAGGGCTTATGCATATTTTGCTGAGATTGAAGATTTGGGTTGGAATGAGACTCGGAAGTTCAAATTGGAGGAACCTAACATTCCGGATTCGAGTAACGCAGTGGTGAATATTGCAGAGAATGCTAATGGTACCTATACTCTTTATGAACCGAGTTATATGAACGTGACTCTGAGTTTTGTGCTTTCGTTCTCGTTCGTCAAGACTCGAGATTCGACTCGTGGACCACTTTTGAATGCATTGGAAATTAGCAGATATGTTGAGATTGCTGCCAAGACTGATGGGCGAGATGAGTCTGTTGTGAATGTCCTCCGTAACGTGTCGGCAGAGAATGTTTGGTCAAATGAAGGCGATCCTTGTGTTCCAACAAGCTGGGAATGGGTGACTTGTTCTGCCACGCAACCGCCGAGAATAACTAAAATAGAGCTTTCCAGAAAGAATGTCAAAGGAGAAATTCCACCAGAGATCAATACTATGGATGGGTTAATAGAATTGTGGTTGGATGGAAATTCCCTTGCAGGGCCACTGCCTGACATGAGTAATCTAATAAACTTGAAGATTTTACATCTAGAGAATAACAAATTGACAGGGACGTTGCCTTCTTACCTGGGTAGTTTGCCCAACTTACAGGAACTATATATTCAAAACAATACGTTTTCGGGTGAAATACCTTCAGAATTATTGGCAAAGAAACTCATCTTTAATTTCGATCTTACGAGTCAGGACTCATCTCGAGGGAGTCATGGCTCGATGCGTGTTTTTCTTGGTAGAAATCATGAAGTCTATGTAGATTGTACATTGTACGACGGTAACGTGGGGCTGCACAAAAGTGAGCGATACAAGATGCATTCTCAGCTTATAGCAGGAGTTTCATTGGGAGTGCTTGTGCTTCTAGTTATTCTACTTTTAGGAAGTTTGCTGTTACTCCGCAAGCTTCGAAGAAGAACGACGCCTTACCAGAAAAAAGGTGGTTCTCTGCAAATCAGCACAAAGCGCTCTTCTGGCTACTCGATTGGCAAGGGGGACGATGGCATGGCCTACTATTTATCTCTTTCCGAGCTGGAAGAAGCGACAAATAACTTCTCTAAGAAAATTGGTAAAGGCAGCTTTGGATCAGTCTTTTATGGGAAGATGATTGACGGCAAAGAAGTAGCAGTTAAGATCATGGCTGAGTCATCTACGCATGGGAATCAACAATTTATGACTGAGGTTGCCCTCTTATCGAGAATTCATCACCGGAATTTGGTCCCTTTGATCGGGCTTAAGAAAAGTTCAGTTTTCCAGTCTTTCTCCATTAATCATTTATTGGCAGGTTCTACAACTCAAAAGCACTTGGACTGGCTGGCTCGCCTGCACATTGCAGAAGATGCAGCTAAAGGGCTCGAGTATTTGCACACGGGATGCAGCCCGAGTATCATTCATCGAGATGTAAAAACTAGCAACATACTCCTCGACATCAATATGAGGGCAAAAGTTTCCGACTTTGGACTCTCGAGGCAAGCCGAGGAAGATTTGACCCATGTATCAAGCGTTGCTCGAGGAACCGTAGGCTATTTGGATCCTGAGTACTATGCTTGTCAACAACTTACCGAAAAGAGCGACGTCTATAGTTTTGGGGTCGTGCTTCTCGAACTGATCTCTGGGAAGAAACCTGTCTCACCAGAAGACTATGGCAATGAATTGAACATTGTTCACTGGGCGAGGTCCCTGGTCCATAAAGGGGACGTGACGAGCATCGTAGATCCATTTTTAGAAGGAAAAGTCAAAATAGAATCGGTGTGGAGAATCGCTGAAGTTGCCATACAATGTGTGCAGCAGCATGGAGTTTCCAGGCCAAGGATGCAAGAAGTCATCTTGGCCATACAAGATGCAATCAAGATTGAACAAGGTAGTGAAGGAAACCAGAAGCTATCTTCAGGCAGTTTAAAAGCACAATCATCTCGAAAAACTTTGCTGACGACCTTTCTTGAAATCGAGAGCCCTGATGGTTCTCTCCTTCCCTCTGCAAGATAA 2841 43.15 MGFPLFWVLILLLVVSSVHCQVKEFISIDCGGTKNFTDPVTGLAWISDAGIMNAGGSSPVENPNGNLMQYQTRRDFPIDDKKYCYTLKTEERRRYLVRATFQYGSLKNEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIIRAPSNSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDNFFLEVAARVNFGALTKDVIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERISTLNNINVMTREYPPVKVMQTAVLGTKGVLSYRLNLDDFPANARAYAYFAEIEDLGWNETRKFKLEEPNIPDSSNAVVNIAENANGTYTLYEPSYMNVTLSFVLSFSFVKTRDSTRGPLLNALEISRYVEIAAKTDGRDESVVNVLRNVSAENVWSNEGDPCVPTSWEWVTCSATQPPRITKIELSRKNVKGEIPPEINTMDGLIELWLDGNSLAGPLPDMSNLINLKILHLENNKLTGTLPSYLGSLPNLQELYIQNNTFSGEIPSELLAKKLIFNFDLTSQDSSRGSHGSMRVFLGRNHEVYVDCTLYDGNVGLHKSERYKMHSQLIAGVSLGVLVLLVILLLGSLLLLRKLRRRTTPYQKKGGSLQISTKRSSGYSIGKGDDGMAYYLSLSELEEATNNFSKKIGKGSFGSVFYGKMIDGKEVAVKIMAESSTHGNQQFMTEVALLSRIHHRNLVPLIGLKKSSVFQSFSINHLLAGSTTQKHLDWLARLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYACQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGNELNIVHWARSLVHKGDVTSIVDPFLEGKVKIESVWRIAEVAIQCVQQHGVSRPRMQEVILAIQDAIKIEQGSEGNQKLSSGSLKAQSSRKTLLTTFLEIESPDGSLLPSAR 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5893697 5899104 - Lsi04G006420.1 Lsi04g00642 660691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00642 946 PANTHER - 538 922 - -
Lsi04g00642 946 PANTHER - 15 505 - -
Lsi04g00642 946 Pfam Protein tyrosine and serine/threonine kinase 637 894 IPR001245 GO:0004672|GO:0006468
Lsi04g00642 946 ProSiteProfiles Protein kinase domain profile. 635 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00642 946 Gene3D Transferase(Phosphotransferase) domain 1 707 921 - -
Lsi04g00642 946 Pfam Malectin-like domain 28 360 IPR024788 -
Lsi04g00642 946 Pfam Leucine Rich repeats (2 copies) 460 497 IPR025875 -
Lsi04g00642 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 748 760 IPR008271 GO:0004672|GO:0006468
Lsi04g00642 946 Gene3D Ribonuclease Inhibitor 374 523 IPR032675 -
Lsi04g00642 946 SUPERFAMILY L domain-like 389 508 - -
Lsi04g00642 946 Gene3D Phosphorylase Kinase; domain 1 615 703 - -
Lsi04g00642 946 ProSitePatterns Protein kinases ATP-binding region signature. 641 663 IPR017441 GO:0005524
Lsi04g00642 946 PANTHER OS07G0107800 PROTEIN-RELATED 538 922 - -
Lsi04g00642 946 PANTHER OS07G0107800 PROTEIN-RELATED 15 505 - -
Lsi04g00642 946 SMART serkin_6 635 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00642 946 SUPERFAMILY Protein kinase-like (PK-like) 620 894 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02058 Lsi-Chr3:31897116 Lsi04g00642 Lsi-Chr4:5893697 0 dispersed
Lsi04g00642 Lsi-Chr4:5893697 Lsi07g00546 Lsi-Chr7:5757043 5.92E-09 dispersed
Lsi04g00642 Lsi-Chr4:5893697 Lsi02g02962 Lsi-Chr2:35745867 3.23E-121 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83564 PF12819 Malectin_like 1.60E-86 CL0202 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00642 - - csv:101207149 1655.19