Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00643 ATGAAGTGGCGAGATGAGATCAAACTTAGTTATTGGGTTTTGGGTTTTCTAGCAAAGGAAGGAAAGTCTGACTTGGAAACAATGCAATCCCCAATTGCAGTTGAGAAAGTTAAGAAACAAAAGATGACAAGACAAAGCCTTTCTACATTTCATTCTTTTTTTGTCTTTCTTTATCATTTCTTCTCTTGTTCTGTCAAATTCAAAGGAAAAAGAATGTGGCCAGAACAACCCAAAAGGAATTCATTTAAAGAATCTCTTAAAGCTGTTGAAGCTGATATAAGACATGCAAATACATTGGCAGCTATGCTCCCGAGAGATTACGGTGGGTTTTGCATTCAAATGAGATTGCATTACAGCCCATTTGCTCCATTTCTTCTTCATTGGATTGAATGGATGGATTTCAGTTGCACAGATCCTCTTCCAAGCATTATTGACAACTTGAATTCCATTTTCCTGAACCCTGCGGAGAGTTTTCTTTCTCCCGCGACTGCTTCCAGCTATTTAAAGAAATCTAAAGTCCCCATCAATGTTTACTCAAGTATGCAGGTGTACGTCGATGGAAAACCGTTGGTGTCGCCAAGAGAAAGAAAAGCCACCCTCAAGGAGTTCTATGGTCCGTACTTCTCTCCTAACTTTTGCTTTTCTAGAGACAAACAAATTAGTTTCAAATCATTTACTGTGAAAACCATGGCAGCTGTAATATACCCTTCACTTAGGCAACTTCAAAGTGGGCGTGTTGAGTCAAAAGAAGAGACTTCATCTAGGAAGATAACAGAAGATGAAAAACAACTATCTAATGAAGATCTTCAGAGGGATGAAGAGTGTGGGATATGCATGGAGAACTGCAGAGATGTTGTCTTGCCAAATTGTGTTAACAACAAGAATTCCCCCTCTGGTAATCTTGTCTTCAGGAGTGCGAGATCACGTTCCTGTCCCTTCTGTCGCAACAGTCTGAACAGGTTGAGCACCAGGGATCTGTGGGTTCTTACAAGCGACACTGAAATCATCGACTCAGAAACTCTTGCCAAGGAAAATCTATTACATTTCTACCTTTATACCGAAAACCTCCCATTGTTTCAACCAGACATGAATATTTTTATTCCAGATTACATGTTG 1116 39.7 MKWRDEIKLSYWVLGFLAKEGKSDLETMQSPIAVEKVKKQKMTRQSLSTFHSFFVFLYHFFSCSVKFKGKRMWPEQPKRNSFKESLKAVEADIRHANTLAAMLPRDYGGFCIQMRLHYSPFAPFLLHWIEWMDFSCTDPLPSIIDNLNSIFLNPAESFLSPATASSYLKKSKVPINVYSSMQVYVDGKPLVSPRERKATLKEFYGPYFSPNFCFSRDKQISFKSFTVKTMAAVIYPSLRQLQSGRVESKEETSSRKITEDEKQLSNEDLQRDEECGICMENCRDVVLPNCVNNKNSPSGNLVFRSARSRSCPFCRNSLNRLSTRDLWVLTSDTEIIDSETLAKENLLHFYLYTENLPLFQPDMNIFIPDYML 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5901527 5903519 + Lsi04G006430.1 Lsi04g00643 660692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00643 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 325 IPR013083 -
Lsi04g00643 372 MobiDBLite consensus disorder prediction 245 265 - -
Lsi04g00643 372 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 224 372 - -
Lsi04g00643 372 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 168 205 - -
Lsi04g00643 372 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 74 149 - -
Lsi04g00643 372 SUPERFAMILY RING/U-box 269 320 - -
Lsi04g00643 372 PANTHER RING FINGER PROTEIN 41, 151 224 372 - -
Lsi04g00643 372 PANTHER RING FINGER PROTEIN 41, 151 168 205 - -
Lsi04g00643 372 PANTHER RING FINGER PROTEIN 41, 151 74 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00643 - - - csv:101207887 402.134
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02208 Lsi-Chr3:33094073 Lsi04g00643 Lsi-Chr4:5901527 1.18E-44 dispersed
Lsi04g00643 Lsi-Chr4:5901527 Lsi08g01622 Lsi-Chr8:24161059 1.06E-53 dispersed
Lsi04g00641 Lsi-Chr4:5887730 Lsi04g00643 Lsi-Chr4:5901527 7.40E-17 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1118 . . . . . . Bma14g01877 . . . . . . . . . Cpe01g01591 Bhi07g01857 . . . . . . Cla05g02628 Cam05g2819 Cec05g2854 Cco05g2887 Clacu05g2822 Cmu05g2670 Cre05g2787 Cone13ag1107 Cone19ag1095 Cone8ag0715 . Lsi04g00643 . . Cme10g00620 . . . . . . . . . . . Cma04g01807 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008688 0 4 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00643 Lsi_Chr04 FPKM 1.790236 1.111641 42.923595 47.373817 0.563435 0.684732 0.519953 0.144259 0.163007 0.320018