Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00644 ATGGCTCAAGCTGTATTAAATCTGACTCGATTCGTCTCCTTCACGCCAAGCAAAGCCTCTAATGATCCGAAGAAGCTTACAGGGTTTGCTCGTAGAAGTAGCATTAAAGCCATGGCAGGGAATGTCAAAGATAATCTCGATCACTTACGGAGAACTAACGGAAAGGAACACCAAACAACTAAGCCACCAAAGAAACGAGTAGCTCCTGTTGCTCCTGTTGGGCTTTGGGATCGATTTCCGACGGCGAGAACGGTACAGCAAATGATGGAGACAATGGAGAGGATAATGGATGATCCTTTTGCTTACTCGGGGGCATGGCCATCACCTCCATTTACGAGCGATGGAGCTGGGTACAGCAGGGGAAGAACTCCATGGGAGATTAAGGAAGGGGAAAATGAGTATAAGATGAGGTTCGACATGCCAGGAATGACTAAGGACGATGTGAAGGTGTGGGTGGAGGAGAAAATGCTGGTTGTGAAGGCTGAGAAAGTGAAGAAGCCTAGTTCAGAAAATGAGAAGGTAGAAGAAGAAGAAGGAGGAGATTGGTCTGCTAAAAGCTATGGAAGATATAGCAGCAGAATTGCTTTGCCTGAGAATGTTCAATTTGAGAATATTAAGGCAGAGGTTAAAGATGGGGTCTTGTACATAACAATACCAAAGGCTAGTGTTAGAAGTAAAATTGTGGATATCAATGTTCAGTGA 702 44.59 MAQAVLNLTRFVSFTPSKASNDPKKLTGFARRSSIKAMAGNVKDNLDHLRRTNGKEHQTTKPPKKRVAPVAPVGLWDRFPTARTVQQMMETMERIMDDPFAYSGAWPSPPFTSDGAGYSRGRTPWEIKEGENEYKMRFDMPGMTKDDVKVWVEEKMLVVKAEKVKKPSSENEKVEEEEGGDWSAKSYGRYSSRIALPENVQFENIKAEVKDGVLYITIPKASVRSKIVDINVQ 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5902054 5913632 - Lsi04G006440.1 Lsi04g00644 660693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00644 233 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 116 233 IPR002068 -
Lsi04g00644 233 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 233 - -
Lsi04g00644 233 SUPERFAMILY HSP20-like chaperones 89 223 IPR008978 -
Lsi04g00644 233 Gene3D - 80 232 IPR008978 -
Lsi04g00644 233 CDD ACD_sHsps-like 126 220 - -
Lsi04g00644 233 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 233 IPR044587 GO:0009408
Lsi04g00644 233 Pfam Hsp20/alpha crystallin family 126 230 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00644 K13993 HSP20; HSP20 family protein - csv:101208128 373.629
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00644 Lsi-Chr4:5902054 Lsi07g01303 Lsi-Chr7:18989151 1.80E-22 dispersed
Lsi04g00644 Lsi-Chr4:5902054 Lsi04g00932 Lsi-Chr4:9625274 7.32E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1127 . . . . . Bpe10g00774 . . Cmo04g01905 . . . . . Sed01g3445 . Cpe01g01592 Bhi07g01860 Tan04g0105 Cmetu09g1622 Lac13g0095 Hepe10g1551 . . Cla05g02629 Cam05g2820 Cec05g2855 Cco05g2888 Clacu05g2823 Cmu05g2671 Cre05g2788 Cone13ag1110 Cone19ag1098 . . Lsi04g00644 . . . Blo06g00817 . . . . . . . . . . Cma04g01808 . Car04g01821 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012314 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00644 Lsi_Chr04 FPKM 15.370833 14.265523 19.533844 21.015429 15.98048 11.38942 23.505495 13.942593 17.070101 16.050947