Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00648 ATCTCGTTGCGGGCTACAGATCGGCCCAAAGGTACCAACGCGACAGATCGGCAGGAAAAACCTCAGCTATCCGTCTGTTTGGCGAGGGAGAAAAATCAGAGATTTCGCTTTACGGAGAAGAAAATGGCTCCGAAATCCAAAGACAAGCCAAAGGCATCTCCGTCTTCTCAGCCGCCTCCACCCATCGAAGATCAATTCACTTCTCTAAACAGACACATCCAGCGATCTGAATTCTCACAAGCCGTCAAAGTTGCAGATCAAATTTTGTCGATTGCTCCCGGCGACGAAGACGCCCTTCGATGCAAAATCGTAGCCTTGATCAAGGATGATAGAATTGATAATGCTCTTTCAGCAATTCAATCTTCTCAGACAACTGACTTCAGCTTCTTCAAGTTTACAAATCTTGATGTTGTTGGGAGTGTTGAGCCTTCATACTCAATTAACTTGAATGAGATTACGGTTAAGGCATACTGCCTATACAGGCAAAATAAGTTAGATGAAGCTTTGGGTTCCTTGAGAGACCAAGAGAGAAACTCAATGACGATGCTATTGGAATCCCAGATCTTATATCGTTTAGGAAAAATGGATGCTTGCGTGGACACTTATCAGAAGCTCGCAAAATCAAAGATTGATTCTTTAGAAATAAATTATGTTGCAGCTTTAACTGCAGCTGGGCGAGCCTTTGAAGTGCAAGGAGCCATGGAGGCTCTTAGAGTGAAAGCTACCAGTAGCTTTGAGTTGGCATACAATACTGCATGTTCCTTAGTTGACGTGAACAAGTATACAGATGCAGAACAACTGTTACTGTCAGCTCGAAGAATTGGTCAAGAAACACTCATGGAAGAGAATTTGCCTGATGAAGATATTGAGATTGAGCTATCCCCAATAGCTGTCCAACTGGCATACTTGCAGCAGCTTCTTGGTCACACATCAGAAGCCTCTGAAGCTTACAAAGACATCATTAATCGAGATTTGGCAGATGAATCTTCGCTTGCAGTGGCAGTGAACAATCTTATTGCATTGAAAGGTCCAAAAGATATTTCCGATGGCCTTAGAAAACTGGATAAGCTAAAAGAGAAAGATGCACCAAACTTCCGACTTGCTCGTGGACTTGAACCAAAGATTTCCCAAAAACAAAGGGAAACAATATATGCAAACCGTTTCCTTCTCCTTCTCCATGCTAATAAGATGGATCAGGTCATTTTATATCCTACATTTTCTTTTGAACTTTATAACTTTCTGCAACTCTATGCTCGAGAAATGGTTGCAACTCTGGCAGATATGTTTCCAAACAGTGTGACCCCTGTACTGCTTCAAGCGGCTGTATTAGTAAGAGAGAATAAAGCTGGGAAAGCTGAAGAAATTTTGGGTCAGTTTGCTGAAAATTTCCCAGATAAGTCCAAGTTGGTTCTCCTAGCAAGGGCGCAGGTTGCTGCGGCTGCAGGCCATCCTCATATTGCATTCGAGTCCCTTTCTAAGATACATGATATTCAGCACATGCCTGCCACCATTGCTACACTTGTGTCTCTCAAAGAACGTGCTGGAGATGTTGATGGAGCTATTGCCGTGCTCGACTCTGCAGTCAAATGGTGGTCAAATGCCATGACTGAAGACAACAAGCTTGATGTTGTATTGCAGGAAGCAGCTTCCTTCAAGCTGAAGCATGGCCGTGAAGAAGATGCTGCCAAATTATATGAAGAGCTCGTTAAAAGTCATGGAAGTATAGAAGCATTGGCTGGATTGGTCAAGACAGTTGCTCGTGTGGATATTAAGAAGGCAGAAACATATGAGAAGCAGTTGAAGCCATTACCAGGCTTGAAGGAGGTTGATGTGGAGAATCTGGAGAGGACTTCCGGAGCAAAACATGTTGAGAATGCTGCTGATCTTGGAGCATCTGATGCCTACATGGTGGATAAAAACAAGACCAAATCAAAGAAAAAGAGAAAGAGAAAGCCAAGATATCCTAAAGGATTTGATCCTGCAAATCCAGGTCCTCCCCCTGATCCAGAAAGGTGGCTTCCCAGGAGAGAGAGATCAAGCTATAGACCCAAGCGAAAAGATAAGAGAGCTGCCCAGGTGAGAGGTTCCCAAGGAGCAGTGGTTAGAGAAAAACATGAAACTGGTGTCTCTGGAGGCAGTTCCAGCAATGCAAATTCAAAATCTAACCAGGCAACGAGTTCGAAAGGCAACCAAAACACAGGCTCTGAGCAATCCAAGCCTTCATCGAAGTCTTCGAAAAAGAAGTCTAGGAAT 2253 43.63 ISLRATDRPKGTNATDRQEKPQLSVCLAREKNQRFRFTEKKMAPKSKDKPKASPSSQPPPPIEDQFTSLNRHIQRSEFSQAVKVADQILSIAPGDEDALRCKIVALIKDDRIDNALSAIQSSQTTDFSFFKFTNLDVVGSVEPSYSINLNEITVKAYCLYRQNKLDEALGSLRDQERNSMTMLLESQILYRLGKMDACVDTYQKLAKSKIDSLEINYVAALTAAGRAFEVQGAMEALRVKATSSFELAYNTACSLVDVNKYTDAEQLLLSARRIGQETLMEENLPDEDIEIELSPIAVQLAYLQQLLGHTSEASEAYKDIINRDLADESSLAVAVNNLIALKGPKDISDGLRKLDKLKEKDAPNFRLARGLEPKISQKQRETIYANRFLLLLHANKMDQVILYPTFSFELYNFLQLYAREMVATLADMFPNSVTPVLLQAAVLVRENKAGKAEEILGQFAENFPDKSKLVLLARAQVAAAAGHPHIAFESLSKIHDIQHMPATIATLVSLKERAGDVDGAIAVLDSAVKWWSNAMTEDNKLDVVLQEAASFKLKHGREEDAAKLYEELVKSHGSIEALAGLVKTVARVDIKKAETYEKQLKPLPGLKEVDVENLERTSGAKHVENAADLGASDAYMVDKNKTKSKKKRKRKPRYPKGFDPANPGPPPDPERWLPRRERSSYRPKRKDKRAAQVRGSQGAVVREKHETGVSGGSSSNANSKSNQATSSKGNQNTGSEQSKPSSKSSKKKSRN 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5939481 5943128 + Lsi04G006480.1 Lsi04g00648 660697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00648 751 PANTHER SIGNAL RECOGNITION PARTICLE 72 54 750 IPR026270 GO:0006614
Lsi04g00648 751 MobiDBLite consensus disorder prediction 32 48 - -
Lsi04g00648 751 Pfam Putative TPR-like repeat 99 219 IPR031545 -
Lsi04g00648 751 Gene3D Tetratricopeptide repeat domain 294 601 IPR011990 GO:0005515
Lsi04g00648 751 SUPERFAMILY TPR-like 70 275 IPR011990 GO:0005515
Lsi04g00648 751 Gene3D Tetratricopeptide repeat domain 61 231 IPR011990 GO:0005515
Lsi04g00648 751 MobiDBLite consensus disorder prediction 634 751 - -
Lsi04g00648 751 MobiDBLite consensus disorder prediction 1 65 - -
Lsi04g00648 751 Pfam SRP72 RNA-binding domain 639 683 IPR013699 GO:0006614|GO:0008312|GO:0048500
Lsi04g00648 751 MobiDBLite consensus disorder prediction 708 740 - -
Lsi04g00648 751 PIRSF SRP72 53 750 IPR026270 GO:0006614
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00648 K03108 SRP72; signal recognition particle subunit SRP72 - csv:101207391 1097.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1135 . . . . . Bpe10g00775 . Bma15g00247 Cmo04g01908 . . . . . Sed01g2093 . Cpe01g01594 Bhi07g01862 Tan04g0103 Cmetu10g0385 Lac13g0093 Hepe10g1549 . . Cla05g02631 Cam05g2824 Cec05g2859 Cco05g2892 Clacu05g2827 Cmu05g2675 Cre05g2792 Cone13ag1119 Cone19ag1104 . . Lsi04g00648 . . Cme10g00628 . . . . . . . . . . . Cma04g01810 . Car04g01823 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007046 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00648 Lsi_Chr04 FPKM 14.136783 13.233212 8.05033 8.456076 11.307253 13.581836 12.53332 5.361599 5.016292 5.295307