Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00650 ATGGCCTTGAATTTTTCGCATCGACCGATTTTTCCCCCACATCTTACGGAGGAGAATTTGGTTTCTTCGATGAGTATTTCCAGTGGTTTTGCTGTCGATGGTGTTTCCGAGAGGAATTCTGATGTTTATGGGACGTCCTGGCTGATTAATCGGGAGCTCGTGGATTGCCTTAATTTTTTAGAGGATACCTGCGAAGTGGGTAGGTCGCGAGATTGTGTCCCTGGGGATGTTTTGGATCTCTTGCCTTCAGATCCATTTGGTATGGATATGAGTACCACTTTTACAGCGATCACAGGCTGGCTTGATGATCTGAATGTAGACTATGGTCGATATGGGAGAGCCCCGAATTACGAGCTTTTTGCTGAATTTAACTACATTTGTAACAGTGCCTTTAGGTTCCAGGCGTTTTCCCTTGGAAACGAAGGAATTCTTCATAGTACTGGTGAGCTGGGGGGATTCGGTGCGTGGTCAGATGAGAGAAAAGCAGATGGTGTGTCCTGCCATTCTGATCCTGAATCACCATATCTTGTCGATACAATTCAGACTCTTGGTATTGAACCTGAAGTTTCTGGAGATGGATTCTGTTCGTGGTCTGATGGGATAAAAGCAGGTGGTTTATCCTGCCATTCTGATCCTGAAGCACCATATCTTGTGGATACATTTCAGAATCTTGGTATTGAACCTGAAATTTCTGGAGATGGATTCTGTTCGTGGTCTGATGGGATAAAAGCAGGTGGTTTATCCTGCCATTCTGATCCTGAATTACCCTATCTTGTCGATACAATTCAGACTCTTGGTATTGAACCTGAAGTTTCTGGAGATGGATTTAGTTCGTGGTCTGATGGGATAAAAGCTGGTTTATCCTGCCATTCTGATCCTGAATCACCATATCTTTTGGATGCTTTTCGGAATCTTGGTATTGAACCTGAAATTTCTGGAGATGGATTCAGTTCGTGGTCTGATGGGATAAAAGCTGGTGGTTTATCCTGCCATTCTGATCCCGAATCACCATATCTTGTGGATACATTTCAGACTCTTGGTATTGAACCTGAAATTTCTGGAGATGGATTCAGTTCGTGGTCTGATGGGATAAAAGCAGGTGGGTTATCCTGCCATTCTGATCCCAAATCACCATATCTTGTGGATACATTTCAGACTCTTGGTATTGAACCTGAAATTTCTGGAGATGGATTCAGTTCGTGGTCTGGTGGGATAAAAGTAGGTGGTTTATCCTGCCATACTGATCCTCAATCATCATATGTTGTGGATACAATTCAGACTTTTGGTATTGAACCTGAAATTTCTGGAGGGGGATTCAATGCGTGGTCTGATGGAAGAAAAGCAGGTGCTGTATCCTTCCATACTGATCCTCGATCATCATATGTTGTGGATACAATTCAGACTCTTGTTATCGAACCTGCAATTTCAGGAGGGGAATTCGGTGTGTGGTCTGATGCGATAGAAGTAGGTGGTTTATCCTGCCTTGCTGAGCCTGAAGCACCACCATATGTTGTGGATACAATTAAGACTCTCGGTATTGAACCTGAAATTTCTGGAGGGAGATTCAGTGTGTGGTCTGATGGGAGAAAAACAGGTCCCTTTTCTTGCCATACTGAACCTCAATCATCATATGTTGTGGATACAATTAAGACTCTTTGTAATGAATCTGAAATTTCTGGAGGGGTATTCGTTGAATGGTCTGATGGGAGACAATCAGGTGCTGTATCCTGTTTTACTGATCCTGAATCACCACCATATTTTGTCGATACATGCCAGACTCTTGGTACTGAATCTGAAACTTCTGGGGTGCAACCTGTAGTTCTTCATGAGGGAGACTGTGTCTCTTTTGATGCACGTGGACCTCCTCATGCAGCTTTAAATTTTGTGCTTGGTTATCTTGGCACGCGGGAACTTCTTGTTGTTGAATCAGTTTGCAAGTCCCTGCAGTCAACTGCGGAAGGGGACCCTTTCTTTTGGAGAAACATTAACATATGTGGAAAGCTGGATGTGAAAATTACAGACGATGTTCTCCTAAATTTGACTAGCAAGGCTCAAGGTGGTCTGGAAAGTCTGAGCCTTGTAAACTGCGTAATGATAAGTGATGATGGTCTCAAGGAGGTGCTTCTCAATAATCCTAAGGTCACAAAGTTGTGTGTTCCAGGATGTACAAGACTCACCATTGGAGGCATTGTTGATAATTTGAAGGCCTTCAAGTCGAGAGGTGGACCGGGAATAAAACATTTAAGTATAGCTGGAATGTATGGAGTAACAGAAGTGCATTTTAAGGAGTTGGAGAAGCTGTTAGTAGGTATTGAGAACTTTACTCACCTAAATGCTCGCGAACCTCGATTTTATCGAGGAGGTGAACCTCGTTTTCCATCAAGCAATGGTGGGCGTGCCATTGACATAGAAAGATGCCCAAAATGTATGAATATGAGGATCGTTTATGACTGCCCGGTGGTTGGCTGCAAAGGAATAAAAGAAGGTGACACCAACCCTGATGCCAACACGCCGAGATGCAGGGCATGCACCCTTTGTATAGCTCGGTGCAATTGGTGTGGACGCTGCATCGATGAGACAGTACATGAGGAGACATTTTGTCTGGACTTGCGTTGCATTGATTGTGGGAAGGAGATATCGAAATGTGAATAA 2652 43.63 MALNFSHRPIFPPHLTEENLVSSMSISSGFAVDGVSERNSDVYGTSWLINRELVDCLNFLEDTCEVGRSRDCVPGDVLDLLPSDPFGMDMSTTFTAITGWLDDLNVDYGRYGRAPNYELFAEFNYICNSAFRFQAFSLGNEGILHSTGELGGFGAWSDERKADGVSCHSDPESPYLVDTIQTLGIEPEVSGDGFCSWSDGIKAGGLSCHSDPEAPYLVDTFQNLGIEPEISGDGFCSWSDGIKAGGLSCHSDPELPYLVDTIQTLGIEPEVSGDGFSSWSDGIKAGLSCHSDPESPYLLDAFRNLGIEPEISGDGFSSWSDGIKAGGLSCHSDPESPYLVDTFQTLGIEPEISGDGFSSWSDGIKAGGLSCHSDPKSPYLVDTFQTLGIEPEISGDGFSSWSGGIKVGGLSCHTDPQSSYVVDTIQTFGIEPEISGGGFNAWSDGRKAGAVSFHTDPRSSYVVDTIQTLVIEPAISGGEFGVWSDAIEVGGLSCLAEPEAPPYVVDTIKTLGIEPEISGGRFSVWSDGRKTGPFSCHTEPQSSYVVDTIKTLCNESEISGGVFVEWSDGRQSGAVSCFTDPESPPYFVDTCQTLGTESETSGVQPVVLHEGDCVSFDARGPPHAALNFVLGYLGTRELLVVESVCKSLQSTAEGDPFFWRNINICGKLDVKITDDVLLNLTSKAQGGLESLSLVNCVMISDDGLKEVLLNNPKVTKLCVPGCTRLTIGGIVDNLKAFKSRGGPGIKHLSIAGMYGVTEVHFKELEKLLVGIENFTHLNAREPRFYRGGEPRFPSSNGGRAIDIERCPKCMNMRIVYDCPVVGCKGIKEGDTNPDANTPRCRACTLCIARCNWCGRCIDETVHEETFCLDLRCIDCGKEISKCE 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5946555 5949320 + Lsi04G006500.1 Lsi04g00650 660699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00650 883 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 1 883 - -
Lsi04g00650 883 ProSiteProfiles F-box domain profile. 615 662 IPR001810 GO:0005515
Lsi04g00650 883 SUPERFAMILY RNI-like 670 783 - -
Lsi04g00650 883 PANTHER F-BOX PROTEIN SKIP14 1 883 - -
Lsi04g00650 883 Gene3D Ribonuclease Inhibitor 638 781 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00650 - - - cmos:111449320 1204.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00650 Lsi-Chr4:5946555 Lsi09g00677 Lsi-Chr9:7669591 1.42E-41 dispersed
Lsi04g00650 Lsi-Chr4:5946555 Lsi08g01614 Lsi-Chr8:24076767 9.52E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1136 . . Bda01g02193 . Bpe13g00519 . Bma14g01878 Bma15g00246 . Cmo18g00710 . Cma18g00723 . Car18g00669 Sed06g1724 Cpe09g00566 Cpe01g01595 Bhi07g01864 Tan04g0101 Cmetu10g0075 . Hepe10g0079 . . . . . . . . . Cone13ag1120 Cone19ag1105 Cone8ag0721 . Lsi04g00650 . . Cme10g00629 Blo06g00819 . . . . . Bma01g00025 . . . . Cma04g01812 . Car04g01824 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012567 0 2 0 0 0 1 2 1 1 1 0 1 2 1 1 1 1 0 2 1 1 0 1 1 1 1 1 2 3 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00650 Lsi_Chr04 FPKM 6.476191 7.727937 11.094979 12.720522 4.270672 3.179697 3.393589 18.112827 16.759069 22.33396