Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00651 ATGGCTTCCAAAACAGCAACCAAAGATATCATCACTCTTCGCGGTTCTGCAGCGATTGTCAGCGAGTTCTTCGGGTATGCTGCAAATAGGTATGAATACTGGATATGCTTTCTCTGTTCTTATTTTTGTTATGGGATCGTCATCCTTTACAATCGTGGGCTTTATCCGGAAGAAAGTTTTGTTAGGGTTAAGAAATATGGACTTCCTATGTTGCTTACTCAAGATGAAGGTGTTAAGACCTTCATTTCTAATCTAACTGCTCAGCTTTCTGATTGTAGTGTGATTTATACTTTCCTGAGAATTATATTTATTGAGAAGTTTTGGAATCGTGAAATTGAATGGCTGGAAGCTGGGAAGTTACAAAGGGTTGTGCTAGTTATAATGAGCAAATCCAACAATGAGGTCCTTGAGAGGTGGAATTTCAGAATCGAAACTGACGGAGAGGTGGTCGAGCAAGGTGTGTCGAGGGAAAAGAGTGATAAAGAAATAATGAGGGAGATCCAAGCAATTATGAGACAGATTGCTTCAAGCATCACCTACTTGCCCTGCCTAGATGAACCCTGTGTATTTGATGTGTTAGCATATACTGATAAGGATCTTGCAGTTCCATTTACTTGGATGGAGAGTGATCCCAAACTGATTGCTAATCCACAAATGGTGAAGCTGCATTCTTTTGACACAAAGGTGAGGGAATGGGACTTTCGTGCAGGAATATCGAACTTATTTGTTTCCACTAATCTCGATTCGCAGCAAATTCACAAAGTGGACACTCTTGTTTCTTACAAGAATGATGATTGCGATGACGAGTAA 810 40.25 MASKTATKDIITLRGSAAIVSEFFGYAANRYEYWICFLCSYFCYGIVILYNRGLYPEESFVRVKKYGLPMLLTQDEGVKTFISNLTAQLSDCSVIYTFLRIIFIEKFWNREIEWLEAGKLQRVVLVIMSKSNNEVLERWNFRIETDGEVVEQGVSREKSDKEIMREIQAIMRQIASSITYLPCLDEPCVFDVLAYTDKDLAVPFTWMESDPKLIANPQMVKLHSFDTKVREWDFRAGISNLFVSTNLDSQQIHKVDTLVSYKNDDCDDE 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5950735 5953609 - Lsi04G006510.1 Lsi04g00651 660700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00651 269 Pfam HORMA domain 48 227 IPR003511 -
Lsi04g00651 269 SUPERFAMILY The spindle assembly checkpoint protein mad2 11 233 IPR036570 -
Lsi04g00651 269 Gene3D HORMA domain 1 236 IPR036570 -
Lsi04g00651 269 ProSiteProfiles HORMA domain profile. 31 236 IPR003511 -
Lsi04g00651 269 PANTHER MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2A 1 265 IPR027097 GO:0007094
Lsi04g00651 269 PANTHER MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2 1 265 IPR045091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00651 K02537 MAD2; mitotic spindle assembly checkpoint protein MAD2 - csv:101208371 369.392
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1140 . . . . . Bpe10g00776 . Bma15g00245 Cmo04g01909 Cmo18g00709 . Cma18g00721 . Car18g00668 Sed01g2092 Cpe09g00567 Cpe01g01597 Bhi07g01866 Tan04g0099 Cmetu10g1838 Lac13g0091 Hepe10g1545 . . Cla05g02632 Cam05g2826 Cec05g2862 Cco05g2894 Clacu05g2830 Cmu05g2677 Cre05g2794 . Cone19ag1106 . . Lsi04g00651 . . Cme10g00631 Blo06g00820 . . . . . . . . . . Cma04g01813 . Car04g01825 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004339 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 7 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00651 Lsi_Chr04 FPKM 52.314533 57.196892 20.066811 19.531975 43.502502 51.57209 43.79092 23.867567 21.450129 22.481419