Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00654 ATGTGGGTTTTGCTTCACTCGTGTAAACGAGAGGTAGAGAGTGAATCTCTTCAGTCGAGAAACAGAGTGTTTCGTGAGTTTAAATGGGTAATCAACATTACTATATTTTGTAATGCTGTTATTCCATTTTGGTATTCGGGGTTTGTTGTCTTTGAGTACTGGAATCGTAGAATCGTTTGTTGGGAATCAGCCATTTCTGCTTTAACTTGGATATTGGCTGCTGCGATTGCTTTTTATTGGAGAAATGGAATGTATTATCAAGGCAAAAGATGGCCGTTGATTCTAATTGTTTGGTGGGTTTTCTCTTGTTTTTATGGGTTATGTTCTTCGATTATTTATCTGCTGACTCACTTGAAATCTATGGAGTTTCCTCATTTTCTTCCAAACGCTACTATTGTAGATTTCGCTTCTTTCACTTTGTCTTTGGTTATCTGTTGGACTGCACTGACTGTTAACTATTCCAAGAAACATAATGATCTTGAGAAGTCATTGCTTCAAAAAGACAATGATTGTTCTTCTGAAAATGATGGTGGTTTCATCAATCCTGGATTGTGGAGTCGAATTACATTCCAATGGCTGAATCCTCTCTTCAAAAGGGGGAGGAATCAGAAACTTGAATTAGCTCATGTTCCTTGTGTACCTCAATCTGAAACAGCTGAATATGCTTCTTCACTGCTAGAAGAATCACTTCAGAGAAAGAAAGTTGAATCTTCTTCCTTGCCCAAAGCTATAGTTTTAGCCACATGGAAAACCCTGGTCTTAACTGCAATTTTTGCAGGATTCAACACATTGGCATCCTTTATGGGGCCTCTCCTAATCACCAACTTTGTGAATTATCTGTTGGGAAAAAGTGATGGCTCAAGCAACCGTGATGGGTTGATTCTTGCCTTCTTCTTCTTCTTTGCTAAAACATTGGAGTCTCTTACTCAAAGACAATGGTATTTCGGCACTCACCGTGTCGGTATACAGGTAAGGGCAGCTCTTACAGTGATGATCTACAAGAAATCTATATCTATTAATGCTGCTGGTCCAAGTAATGGTAAAATCATAAATCTAATAAATGTGGATGTTGAAAGAATTGGAGACTTCTCCTGGTATATTCACAAGATTTGGTTGCTTCCTGTTCAAATAGCTCTAGCCCTTATCATCCTTTACAGGAATCTTGGAGCTGCTCCTTCCATTACTGCTCTTTTAGCCACAATATTTATAATGGTGAGCAACACACCTTTGGCCAATGTTCAAGAAAGTCTACACTCAAAGATAATGGATGCAAAAGATTCTAGAATCAAATTGACATCAGAGACTCTAAAGAACATGAGAGTGTTGAAACTGCATTCTTGGGAACAGACATTTTTGAAGAAGGTCTTGAAACTTAGAGAAGTTGAAAGAAGTTGGTTGAAGAGATACCTCTATACCTGCTCAGTTATAGCATTTCTCTTTTGGGTTTCACCAACTTTAGTTTCAGTAGTTACTTTTGGCGCCTGTGTTATGATGAAAATCCCTCTAACAGCAGGCACAGTTCTATCAGCCATTGCTACTTTTCGTATCCTACAAGAACCAATTTATAACCTACCAGAGCTAATTTCCATGATTGCTCAAACAAAAGTTTCCCTTGACCGTATACAAGAGTTCATTCGAGAAGAAGATCAAAGGAAGCAGATTTATTATCCTCCTTCCAATGCATCAGGCGTCGCGATTGAAATGGAGGTGGGGGAGTATTCATGGGAAGCCAGTGATCTAAATTTTAAGAAACCAACTATAAAAGTTGCAGAGAAGATGCAAATACCAAAGGGTTACAAGGTTGCAGTTTGTGGATCAGTTGGTTCAGGAAAGTCAAGCCTACTTTGTAGTATACTTGGCGAGATCCCACAGGTTTCAGGAACACAAATGAAAGTACATGGAACTAAAGCTTATGTTCCCCAAAGTGCTTGGATTCAGTCAGGTACTGTAAGGGAGAATGTGCTGTTTGGGAAAGAGATTGACCAACATTTTTATGAGGATGTGTTAGAAGCCTGTGCTTTGAATCAGGATATCAAGTTGTGGCTGGATGGAGATTGTACTTTGTTGGGAGAGAGGGGGTTGAACTTAAGTGGAGGGCAAAAGCAGAGGATTCAATTGGCAAGGGCAGTCTATAGTGATGCAGATGTTTACTTCCTGGATGATCCTTTTAGTGCTGTGGATGCATGTACTGGAACACATTTGTTCAAGGTGATGAAAAATGGTCATATAGTTCAATCAGGAAAGTATGCAGAATTAATGTCAGACTCAAACGGTGAACTTGCTAGGCACATTGCAGCTCATAGAAGATCACTGAATGGAGTTAAGCCATTCAAAGAAGATAAACCCCATCAAAAAAGACCATGTAAGACACATCAGATAGAAGCTCTGGATGAAAATTCTTCACTATCCCTTGGAAATGGTGGCCACTCTGTGAGAACTCAAGAAGAGGAAACTCAAACTGGTCGTGTAAAGTGGAGTGTCTACTCAACCTTCGTCACATCTGCTTATAAAGGAGCCCTTGTTCCTGTAATCCTTCTATGTCAAGTTTTGTTTCAAATCCTTCAGATGGGCAGTAATTACTGGATTTCTTGGGCAACAGAAGAAGAAGGCAAGGTCAGCAGAGAGCAGTTGTTAGGGATCTTCGTTTTGATGTCCGGTGGGAGCTCCATCTTTATATTAGGCCGGGCCGTTTTGATGGCAACCATTGCTATTGAGACTGCACAACGAATGTTTCTTGGAATGGTGACATCAATATTTGCAGCACCTATTTCATTTTTTGATGCCAAACCTTCAAGCCAAATCCTTAACAGGTCTTCTACTGATCAAAGCACCTTGGATACAGACATCCCTTATAGATTAGGAGGATTGGCTTTTGCACTCATTCAGCTGTTGAGTATCATCATCCTGATGTCCAAGTTGGTTGACGATTATTCTCGTGTGGTTTTTCATAACTCAACTTCAATGGAATGGTTGTGCCTGCGAATCAATTTTCTTTTCGACGTTGTCTTCTTTCTTGCTCTTATCATCTTAGTGACCCTTCCTAGAACAGCAATTGATCCAAGCTTAGCAGGATTAGCAGCCACCTATGGTTTGAACATGAATGTGCTTCAGGCTTGGGTAATATGGAATTTATGCAATGTTGAGAACAAAATGATATCTGTTGAGAGAATTCTTCAGTTTACTAACATCGCTTCTGAGGCGCCACCGGTTATCGAAGATTGTAGGCCAATGCCAGAATGGCCAAAGGAGGGAAAGGTAGAACTTGAGAACCTTCATGTCCAATACCGTCCTAATCTTCCAGTGGTTCTCAAAGGGATCACTTGTACCTTCCCAAAAACGAAGAAAATTGGAGTTGTTGGCAGGACAGGAAGTGGAAAATCCACCTTAATCCAAGCACTTTTTAGAGTGGTAGAGCCTTCTGCAGGAAGGATTCTCATTGATGGAGTTGACATTTGCAAAATTGGTCTACATGATCTGAGGTCCAAGTTGGGTATTATTCCACAAGACCCAACGTTGTTCCAAGGAACCATGAGAACTAACCTAGATCCTTTGCAACAACATACTGATCAAGAAATATGGGAGGTCCTTCACAAGTGTCGTTTTGCCGAGATCATCCGAACGGACCACGCAGTTCTTGAAGCACCAGTTGCTGAAGATGGAGAGAATTGGAGTGTGGGACAGCGGCAACTTGTTTGTCTGGCCAGGGTGCTCCTCCAAAAACGTAGGATTCTTGTGTTGGATGAGGCAACAGCTTCCATTGATACTGCAACAGAAAATATAATTCAGGAAACAATAAGAGAGGAGACTAATGGTTGTACTGTCATTACCGTGGCTCATCGAATACCGACAATTATCGATAACGATTTGGTTTTGGTTCTTGATGAAGGCAAGCCAACTTCTTATTTAGCTTTAAAAAGAATTCTTCTGAAAAATGGCAAGGTGATCGAGTATGATTCACCATCTCGATTACTCGAGAACCGTTCTTCTATGTTTTCAAAGTTGGTGGCGGAATTCTTAAGTAGATCATCCAATAGTCACTCACAATCCATAGGGACTTTTGCCGAAACCGACACGAACCGAATATGA 4086 40.58 MWVLLHSCKREVESESLQSRNRVFREFKWVINITIFCNAVIPFWYSGFVVFEYWNRRIVCWESAISALTWILAAAIAFYWRNGMYYQGKRWPLILIVWWVFSCFYGLCSSIIYLLTHLKSMEFPHFLPNATIVDFASFTLSLVICWTALTVNYSKKHNDLEKSLLQKDNDCSSENDGGFINPGLWSRITFQWLNPLFKRGRNQKLELAHVPCVPQSETAEYASSLLEESLQRKKVESSSLPKAIVLATWKTLVLTAIFAGFNTLASFMGPLLITNFVNYLLGKSDGSSNRDGLILAFFFFFAKTLESLTQRQWYFGTHRVGIQVRAALTVMIYKKSISINAAGPSNGKIINLINVDVERIGDFSWYIHKIWLLPVQIALALIILYRNLGAAPSITALLATIFIMVSNTPLANVQESLHSKIMDAKDSRIKLTSETLKNMRVLKLHSWEQTFLKKVLKLREVERSWLKRYLYTCSVIAFLFWVSPTLVSVVTFGACVMMKIPLTAGTVLSAIATFRILQEPIYNLPELISMIAQTKVSLDRIQEFIREEDQRKQIYYPPSNASGVAIEMEVGEYSWEASDLNFKKPTIKVAEKMQIPKGYKVAVCGSVGSGKSSLLCSILGEIPQVSGTQMKVHGTKAYVPQSAWIQSGTVRENVLFGKEIDQHFYEDVLEACALNQDIKLWLDGDCTLLGERGLNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGTHLFKVMKNGHIVQSGKYAELMSDSNGELARHIAAHRRSLNGVKPFKEDKPHQKRPCKTHQIEALDENSSLSLGNGGHSVRTQEEETQTGRVKWSVYSTFVTSAYKGALVPVILLCQVLFQILQMGSNYWISWATEEEGKVSREQLLGIFVLMSGGSSIFILGRAVLMATIAIETAQRMFLGMVTSIFAAPISFFDAKPSSQILNRSSTDQSTLDTDIPYRLGGLAFALIQLLSIIILMSKLVDDYSRVVFHNSTSMEWLCLRINFLFDVVFFLALIILVTLPRTAIDPSLAGLAATYGLNMNVLQAWVIWNLCNVENKMISVERILQFTNIASEAPPVIEDCRPMPEWPKEGKVELENLHVQYRPNLPVVLKGITCTFPKTKKIGVVGRTGSGKSTLIQALFRVVEPSAGRILIDGVDICKIGLHDLRSKLGIIPQDPTLFQGTMRTNLDPLQQHTDQEIWEVLHKCRFAEIIRTDHAVLEAPVAEDGENWSVGQRQLVCLARVLLQKRRILVLDEATASIDTATENIIQETIREETNGCTVITVAHRIPTIIDNDLVLVLDEGKPTSYLALKRILLKNGKVIEYDSPSRLLENRSSMFSKLVAEFLSRSSNSHSQSIGTFAETDTNRI 1361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5978596 5984384 + Lsi04G006540.1 Lsi04g00654 660703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00654 1361 Pfam ABC transporter 1103 1251 IPR003439 GO:0005524
Lsi04g00654 1361 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1086 1336 IPR003439 GO:0005524
Lsi04g00654 1361 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 92 972 - -
Lsi04g00654 1361 Pfam ABC transporter 593 723 IPR003439 GO:0005524
Lsi04g00654 1361 Gene3D - 564 775 IPR027417 -
Lsi04g00654 1361 CDD ABCC_MRP_domain1 566 736 - -
Lsi04g00654 1361 SUPERFAMILY ABC transporter transmembrane region 842 1068 IPR036640 GO:0005524|GO:0016021
Lsi04g00654 1361 SMART AAA_5 1112 1299 IPR003593 -
Lsi04g00654 1361 SMART AAA_5 597 799 IPR003593 -
Lsi04g00654 1361 ProSitePatterns ABC transporters family signature. 696 710 IPR017871 GO:0005524
Lsi04g00654 1361 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 568 798 IPR003439 GO:0005524
Lsi04g00654 1361 PANTHER OS01G0902100 PROTEIN 972 1345 - -
Lsi04g00654 1361 SUPERFAMILY ABC transporter transmembrane region 248 549 IPR036640 GO:0005524|GO:0016021
Lsi04g00654 1361 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 253 533 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi04g00654 1361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 756 IPR027417 -
Lsi04g00654 1361 Pfam ABC transporter transmembrane region 847 971 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi04g00654 1361 Pfam ABC transporter transmembrane region 254 520 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi04g00654 1361 Gene3D ABC transporter type 1, transmembrane domain 972 1067 IPR036640 GO:0005524|GO:0016021
Lsi04g00654 1361 Gene3D ABC transporter type 1, transmembrane domain 808 971 IPR036640 GO:0005524|GO:0016021
Lsi04g00654 1361 Gene3D ABC transporter type 1, transmembrane domain 227 551 IPR036640 GO:0005524|GO:0016021
Lsi04g00654 1361 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 843 1014 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi04g00654 1361 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 972 1345 - -
Lsi04g00654 1361 CDD ABCC_MRP_domain2 1084 1320 - -
Lsi04g00654 1361 Gene3D - 1070 1338 IPR027417 -
Lsi04g00654 1361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1077 1301 IPR027417 -
Lsi04g00654 1361 CDD ABC_6TM_ABCC_D1 254 541 IPR044746 GO:0140359
Lsi04g00654 1361 PANTHER OS01G0902100 PROTEIN 92 972 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00654 - - - csv:101219301 1780.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00654 Lsi-Chr4:5978596 Lsi05g01909 Lsi-Chr5:26261662 5.38E-06 dispersed
Lsi04g00652 Lsi-Chr4:5959399 Lsi04g00654 Lsi-Chr4:5978596 2.27E-06 proximal
Lsi04g00653 Lsi-Chr4:5959697 Lsi04g00654 Lsi-Chr4:5978596 1.26E-94 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1141 . . . . . . . . Cmo04g01910 Cmo18g00707 . Cma18g00720 . Car18g00666 . Cpe09g00569 Cpe01g01598 Bhi07g01868 . . Lac13g0089 Hepe10g1543 . . Cla05g02633 . Cec05g2863 Cco05g2895 Clacu05g2831 Cmu05g2678 . . . . . Lsi04g00654 . . Cme10g00632 Blo06g00821 Blo11g00984 . . . . . . . . . Cma04g01814 . Car04g01826 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006115 0 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 2 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00654 Lsi_Chr04 FPKM 26.178696 29.291113 28.171839 25.109594 30.465763 26.923422 32.016525 13.833954 13.429586 14.584001