Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00655 ATGACCTTGCGTATTCAGAAGAGTCTTAAGAGCATTTGCGGTGTTCTTGATCGTTGTAAATCGTTTGTCTATTTTCATGTATCCTCTCAAAGCTATTCCCATGCCCTCTCCTCTGAAAAAATTTCGTCTTCGCTGGAACCTACTATCTTTGTAGGAGCTAGAGATTTGCAGCAAAGAATACCATCTGAATTTCAGACAAAACTTTCTGATATTGACTTGATCATTGCTAAAGTTCAGGTGGGTAGCAGCGAGGATGAGGTTTTTCAGTCTCTCTTGCACGATTCAGTGTGTAACACCATACAGTTCTCCCATGAACTTGTTTACAAGTTGCTCCAACGATTCAAAGATGATTGGAGATCTGCTTTGGGTGTTTTTAGATGGGCAGAGTCACTCTCTGGATTCAAGCATACACCAGATTTATATGACATTATAATAGATACACTGGGAAAAACAAAGCAAATGGTTAGGATGAAAAGTATGCTAGAAGAAATGAAAGAAGCTCGCCTTGTGACACTTGATACTGTAGCTAAGGCTATGCGAAGGTTTGCTGGTGCTGGACAATGGGAAAACGCTGTTAGGATATTTGATGATTTGGAAACTTTTGGGTTGAAGAAGAACACTGAATCTATGAATGTGTTGCTTGATACTCTGTGCAAAGAGAAGAAGGTCGAGCAAGCTCGACAGATATATTTGGAACTCAAATCACATATTCCCCCAAATGCAAACACGTTTAACATGTTCATTCATGGTTGGTGTAAAGTTGATAGGGTTGATGAGGCACATTGGACGTTACAAGAGATGAAAGGCCATGGTTATCCTCCTTGTGTTATTAGTTATTCGACGATTATTCTATTTTATTGTCGTCATTACGACTTTAGTAAGGTTTATGAGTTGCTTGATGAAATGGATGCTCAAGGATGCCCAGCAAATGTCATCACTTACACCACTATCATGTGCTCACTAACAAAGTCGGAGGAATTCAAGGAAGCCTTGCAAATTGCCGAGAGAATGAAATCTGCTGGATGCGAACCTGATATACTTTTCTATAATTGTTTGATCCATACATTAGGGAGAGCGGGTAAAGTATGGGAAGTTATTCATGTATTCGAAGTAGAAATGCCAAGCAAGAGTGTTTTACCAAATACATCAACCTACAATTCTATGATTTCCATGTACTGTCATCGTGCACAAGAACAAAAGGCTATGAAACTGCTCGAGGAGATGGAGAAATCAGGGCTTTGTAAACCAGATGTCCAGACATATTACCCATTGCTTAAATCCTGTTTTAGAACTGGAAAGACAGACTATGTTCTGAGCAAGTTATTGGATGAGATGATAAATAAACATCATCTGAGTCTTGATATATCAACCTATTCCCTTTTAATTCATGGTCTTTGTAGAGCAAATAAGTGTGAGTGGGCTTACCAGTTATTTGAGAAGATGATTAGTCAAGATATAAAGCCAAGATACCTCACATGTCAACTGCTTTTGGATGAAGTTAAGCGGAAGAATATGGATGAAGTTGCTGATAGGATTGAAGTTATCATGAAGAACTTGTGA 1560 38.78 MTLRIQKSLKSICGVLDRCKSFVYFHVSSQSYSHALSSEKISSSLEPTIFVGARDLQQRIPSEFQTKLSDIDLIIAKVQVGSSEDEVFQSLLHDSVCNTIQFSHELVYKLLQRFKDDWRSALGVFRWAESLSGFKHTPDLYDIIIDTLGKTKQMVRMKSMLEEMKEARLVTLDTVAKAMRRFAGAGQWENAVRIFDDLETFGLKKNTESMNVLLDTLCKEKKVEQARQIYLELKSHIPPNANTFNMFIHGWCKVDRVDEAHWTLQEMKGHGYPPCVISYSTIILFYCRHYDFSKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEFKEALQIAERMKSAGCEPDILFYNCLIHTLGRAGKVWEVIHVFEVEMPSKSVLPNTSTYNSMISMYCHRAQEQKAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDYVLSKLLDEMINKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMISQDIKPRYLTCQLLLDEVKRKNMDEVADRIEVIMKNL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5987831 5989390 + Lsi04G006550.1 Lsi04g00655 660704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00655 519 Pfam PPR repeat family 380 429 IPR002885 -
Lsi04g00655 519 Pfam PPR repeat family 205 253 IPR002885 -
Lsi04g00655 519 Pfam Pentatricopeptide repeat domain 298 357 IPR002885 -
Lsi04g00655 519 Gene3D Tetratricopeptide repeat domain 304 372 IPR011990 GO:0005515
Lsi04g00655 519 Gene3D Tetratricopeptide repeat domain 75 235 IPR011990 GO:0005515
Lsi04g00655 519 Gene3D Tetratricopeptide repeat domain 236 303 IPR011990 GO:0005515
Lsi04g00655 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 380 IPR002885 -
Lsi04g00655 519 Pfam PPR repeat 141 167 IPR002885 -
Lsi04g00655 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 236 IPR002885 -
Lsi04g00655 519 Pfam PPR repeat 451 481 IPR002885 -
Lsi04g00655 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Lsi04g00655 519 TIGRFAM PPR: pentatricopeptide repeat domain 243 274 IPR002885 -
Lsi04g00655 519 TIGRFAM PPR: pentatricopeptide repeat domain 384 417 IPR002885 -
Lsi04g00655 519 TIGRFAM PPR: pentatricopeptide repeat domain 312 346 IPR002885 -
Lsi04g00655 519 TIGRFAM PPR: pentatricopeptide repeat domain 141 170 IPR002885 -
Lsi04g00655 519 TIGRFAM PPR: pentatricopeptide repeat domain 277 310 IPR002885 -
Lsi04g00655 519 TIGRFAM PPR: pentatricopeptide repeat domain 457 488 IPR002885 -
Lsi04g00655 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Lsi04g00655 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Lsi04g00655 519 PANTHER OS02G0601600 PROTEIN 18 519 - -
Lsi04g00655 519 Gene3D Tetratricopeptide repeat domain 373 518 IPR011990 GO:0005515
Lsi04g00655 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Lsi04g00655 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Lsi04g00655 519 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 18 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00655 - - - csv:101208612 909.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00655 Lsi-Chr4:5987831 Lsi11g00637 Lsi-Chr11:6714659 2.01E-60 dispersed
Lsi04g00655 Lsi-Chr4:5987831 Lsi02g00346 Lsi-Chr2:2942389 5.49E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1144 . . . . . Bpe10g00778 . Bma15g00243 . . . . . Car18g00665 Sed06g0134 Cpe09g00570 . Bhi07g01872 Tan04g0097 Cmetu10g0012 Lac13g0085 Hepe10g1542 . . Cla05g02634 Cam05g2827 . Cco05g2896 Clacu05g2832 Cmu05g2679 Cre05g2795 . Cone19ag1108 . . Lsi04g00655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011749 1 1 0 2 1 0 2 1 1 1 1 1 1 0 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00655 Lsi_Chr04 FPKM 23.442114 29.025696 6.048083 6.161203 22.243454 24.506105 22.674158 2.868785 2.886194 3.010229