Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00657 ATGGAGTTTCAATTGCTTTTCTTCTTCTTCTTCTTCTTCATGTTTCTATTTGTATATGTATTCGCTTACTTGGTTCTGCTTCGAAATTGGGGGCCGAAGCACAGGCTAGAAGCTTCAAGTTGCTTCATATCACTCGCCCATGGCAGTCCCGTCGTCATAATGGCTATAATTGCAATTCTTCAAGCCCCAAATACGACCGATTTCGGCGCTGCCAATACCAAATTCCAAGCCCTAGTTCTCGAATACAGCATAGCTTATTTCTTGTTGGATCTTCTTCATTGTATATTGTTTTCTCCACATAATTTCGTCTTCATATGCCATCATTTGGCAGTACTTTATGTGTTCGTAACATGTAATTACTTGGTTCATCGTGGCGCTGTGCCAATTCTAGGGCTTTTGGTGGTTGCGGAATTGAGCAGTGGGTGCCAAAATGTTTGGACCCTTGCGGGTTATAGAAGGGCTGATGTGCCAGCCGCGGCTAAGTTTCAGGACTTTGTGTCTCCGTATTTCTTTACGTTTTACAGCATTTTAAGAGTGGGGTTAGCGCCGGTTTTCTTGCATAAGATGGGAAAATTTTATGTTAGTAGTGTGGGTGGGAATTTGATTCCTAAGTGGGCTTGGATTTCTTGGATGGGTGTAATTGGAATGGCCATTTTTGTTAGTATGTTGTGGGTTGGGAATCATTGGGTTCTTTGGTTTCGACATAAAAAGCATGGAAAAGCCGTGTGA 729 42.52 MEFQLLFFFFFFFMFLFVYVFAYLVLLRNWGPKHRLEASSCFISLAHGSPVVIMAIIAILQAPNTTDFGAANTKFQALVLEYSIAYFLLDLLHCILFSPHNFVFICHHLAVLYVFVTCNYLVHRGAVPILGLLVVAELSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYSILRVGLAPVFLHKMGKFYVSSVGGNLIPKWAWISWMGVIGMAIFVSMLWVGNHWVLWFRHKKHGKAV 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6001152 6001880 - Lsi04G006570.1 Lsi04g00657 660706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00657 242 SMART lag1_27 33 235 IPR006634 GO:0016021
Lsi04g00657 242 ProSiteProfiles TLC domain profile. 33 223 IPR006634 GO:0016021
Lsi04g00657 242 PANTHER TRAM, LAG1 AND CLN8 (TLC) LIPID-SENSING DOMAIN CONTAINING PROTEIN 8 238 - -
Lsi04g00657 242 PANTHER GLABROUS1 ENHANCER-BINDING PROTEIN-LIKE 2 8 238 IPR040327 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00657 - - - csv:101219781 370.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00657 Lsi-Chr4:6001152 Lsi07g01459 Lsi-Chr7:21244945 1.79E-77 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1165 . . . . . . Bma14g01881 . Cmo04g01912 . . . . . . . Cpe01g01601 . . . . . . . . . . . . . . . . . . Lsi04g00657 . . Cme10g00636 . Blo11g00981 . . . . . . . . . Cma04g01817 . Car04g01829 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013585 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00657 Lsi_Chr04 FPKM 5.952381 5.589202 10.665913 11.071225 12.453138 13.552493 12.123741 8.365415 9.983159 10.198643