Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00663 ATGACCGACGCATTGTTTCTTTCTGGATTAATTTTGATCCTCGAGCATTTTGATCACGATTTTCTTTCTTCTTTAATTTGTTCTACTGAAGAAAACAATATGAAGTTGAGTCCAAGGGAAGTGGAAAAACTAGGTCTGCATAATGCGGGATTTCTAGCACAGAAGCGTCTTGCTCGTGGTTTGAGGCTGAATTACGCTGAAGCTGTAGCACTTATTGCTGCACAGATTTTGGAGTTCGTTCGCGATGGCAATTGCAGCGTGGCAGAATTGATGGAATTGGGGCGAGAACTCTTAGGGAGGAGACAAGTTCTTTCAAGTGTTCCACATCTTTTGGATTATATTCAGGTTGAAGGAACTTTTCCTGATGGGACTAAGTTAATAACTGTTCATAAGCCCATTGATTCAGAGGTTGGCAGCCACTATCACTTCATTGAGACAAATCCTTCTTTAGCTTTTGACCGATCAAAAGCTTATGGCATGCGCCTCAACATATTAGCAGGATCAGCCACACGATTTGAGCCAGGGTGTCCAAAATATGTCACACTTGTAGCTATTGGTGGTAACCAAGTTATCAGAGGGGGAAATTGTATCGCGGATGGTCCAGTTGATAAATCTAAATTGAAAGAAGTGATGGAAGCGGTGCATGCAAGAGGATATGAACATTTGGAAGAAAAAGATGCTAGAGAAGGTGTTACTGGAGGTAAGGACGAGATATTCACCACCAGAGTTCTTCGTGAGGAGTATGCCAACCGCTATGGTCCCACAACTGGCGACAAAGTTCGTCTTGGTGATACAGATTTATATGCTGAAATCGAACATGATTTCTGTGTTTATGGGGATGAATGTATGTTTGGAGGTGGAAAGGTTATCAGAGATGGAATGGGCCAGTCATGCGGGCATCCACCGGCTTCATCTCTTGATACCGTAATAACCAATGCAGTGATCATTGATTATACTGGAATTTTCAAGGCAGATATTGGTATCAAAGATGGCTTCATTATTTCACTTGGAAAAGCTGGCAATCCTGATGTCATGGACAGAGTTTGTCCTAACCTGATTATTGGGGCTAATACTGAGGTTATTTCTGGAGAAGGATTGCTGGTTACTTCAGGGGCTATAGATTGCCATGTCCACTACATATGCCCTCAAATGGTATATGAAGCAATATCGAGTGGCATCACGACACTGATGGGAGGCGGAACTGGCCCTGCTGAAGGAAGTTGTGCTACTACTTGCACACCGTCCCCAGCGCTAATGAAGATGATCCTGCAATCAACTGATAACCTCCCCCTGAACTTTGGCTTTACAGGAAAAGGGAACAGTTCGAAGCCAGATGAGATACATGAAATTATAAGGGCTGGAGCAATGGGACTGAAGCTACATGAAGATTGGGGATGCACTCCTGCTGCAATTGATAGTTGTTTAGCTGTGGCTGAAAAATATGACATTCAGGCACCTCTCTTTCAAAATTTCTCTCTACCAGTTAATATTCACACTGACACCTTGAATGAATCTGGATTTGTGGAAGATACAATTGCAGCCTTTAAAGGAAGAACTATACACACATACCACAGTGAAGGAGCTGGAGGCGGTCATGCACCGGATATCATCAAAGTGTGCAGTGTGAAAAATGTGCTGCCTTCATCAACTAATCCAACACGACCATTCACAACAAATACTATAGATGAACATCTTGACATGCTGATGGTGTGCCATCATCTTGACCCCAATATTAAAGAAGATGTAGCTTTTGCTGAATCAAGGATAAGGAAGGAAACAATTGCTGCAGAAGATATTTTGCATGATTTGGGAGCAATTAGTATCATATCTTCTGATTCACAGGCTATGGGCCGCATTGGAGAGGTGATTAGTAGAACATGGCAAACTGCACACAAAATGAAGTTGCAAAGGGAACTTGATTTGACAAAACCAGACAACCTTCGGATCAAGCGATACATCTCCAAATATACCATCAATCCAGCCATAGCAAACGGGATTTCTCAATATGTTGGTTCAGTAGAGGTAGGGAAATTGGCTGATCTTGTTCTATGGAAGCCGGCCTTTTTTGGGGCAAAACCAGAAAAGGTGTTGAAAGGTGGTATAATTGCATGGGCGAACATGGGTGATCCAAATGCAAGCATTCCTACACCTGAACCGGCAGCTTTTAACGCGGGAGTTAAGGACATGTATGGACTAAACAAGAGAGTTGTAGCAGTGAGCAACACAAGGAAACTCACTAAATTGGACATGAAATGGAATGATGCTCTTCCAAATATCCATGTGGATCCCGATACCTATGAAGTGAAAGTAGATGGGGATGTTCTTACTTGTCTACCCGCCATTACTGTCCCACTTTCAAGGAATTACTTTCTCTTCTAG 2379 42.66 MTDALFLSGLILILEHFDHDFLSSLICSTEENNMKLSPREVEKLGLHNAGFLAQKRLARGLRLNYAEAVALIAAQILEFVRDGNCSVAELMELGRELLGRRQVLSSVPHLLDYIQVEGTFPDGTKLITVHKPIDSEVGSHYHFIETNPSLAFDRSKAYGMRLNILAGSATRFEPGCPKYVTLVAIGGNQVIRGGNCIADGPVDKSKLKEVMEAVHARGYEHLEEKDAREGVTGGKDEIFTTRVLREEYANRYGPTTGDKVRLGDTDLYAEIEHDFCVYGDECMFGGGKVIRDGMGQSCGHPPASSLDTVITNAVIIDYTGIFKADIGIKDGFIISLGKAGNPDVMDRVCPNLIIGANTEVISGEGLLVTSGAIDCHVHYICPQMVYEAISSGITTLMGGGTGPAEGSCATTCTPSPALMKMILQSTDNLPLNFGFTGKGNSSKPDEIHEIIRAGAMGLKLHEDWGCTPAAIDSCLAVAEKYDIQAPLFQNFSLPVNIHTDTLNESGFVEDTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCSVKNVLPSSTNPTRPFTTNTIDEHLDMLMVCHHLDPNIKEDVAFAESRIRKETIAAEDILHDLGAISIISSDSQAMGRIGEVISRTWQTAHKMKLQRELDLTKPDNLRIKRYISKYTINPAIANGISQYVGSVEVGKLADLVLWKPAFFGAKPEKVLKGGIIAWANMGDPNASIPTPEPAAFNAGVKDMYGLNKRVVAVSNTRKLTKLDMKWNDALPNIHVDPDTYEVKVDGDVLTCLPAITVPLSRNYFLF 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6051159 6059630 - Lsi04G006630.1 Lsi04g00663 660712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00663 792 SUPERFAMILY Composite domain of metallo-dependent hydrolases 242 419 IPR011059 GO:0016810
Lsi04g00663 792 Pfam Amidohydrolase family 368 702 IPR006680 GO:0016787
Lsi04g00663 792 PANTHER UREASE 34 136 - -
Lsi04g00663 792 PANTHER UREASE 136 721 - -
Lsi04g00663 792 PANTHER UREASE 720 792 - -
Lsi04g00663 792 TIGRFAM urease_gam: urease, gamma subunit 34 135 IPR002026 GO:0016151|GO:0043419
Lsi04g00663 792 SUPERFAMILY Urease, gamma-subunit 34 136 IPR036463 GO:0016151|GO:0043419
Lsi04g00663 792 SUPERFAMILY Metallo-dependent hydrolases 371 792 IPR032466 -
Lsi04g00663 792 CDD Urease_alpha 242 791 IPR005848 GO:0006807|GO:0009039|GO:0016151
Lsi04g00663 792 Gene3D - 30 130 IPR036463 GO:0016151|GO:0043419
Lsi04g00663 792 ProSiteProfiles Urease domain profile. 371 792 IPR017951 GO:0006807|GO:0009039|GO:0016151
Lsi04g00663 792 Gene3D Urease, subunit C, domain 1 241 721 IPR011059 GO:0016810
Lsi04g00663 792 Gene3D Urease, beta subunit 136 240 IPR036461 -
Lsi04g00663 792 SUPERFAMILY Urease, beta-subunit 136 231 IPR036461 -
Lsi04g00663 792 Hamap Urease subunit alpha [ureC]. 241 792 IPR005848 GO:0006807|GO:0009039|GO:0016151
Lsi04g00663 792 Pfam Urease alpha-subunit, N-terminal domain 243 361 IPR011612 -
Lsi04g00663 792 Pfam Urease subunit beta-alpha linker domain 202 233 IPR040881 -
Lsi04g00663 792 ProSitePatterns Urease active site. 569 585 IPR017950 GO:0009039
Lsi04g00663 792 Pfam Urease, gamma subunit 34 133 IPR002026 GO:0016151|GO:0043419
Lsi04g00663 792 PIRSF Urease 135 724 IPR008221 GO:0006807|GO:0009039|GO:0016151
Lsi04g00663 792 PIRSF Urease 34 136 IPR008221 GO:0006807|GO:0009039|GO:0016151
Lsi04g00663 792 PIRSF Urease 719 792 IPR008221 GO:0006807|GO:0009039|GO:0016151
Lsi04g00663 792 ProSiteProfiles Rhodanese domain profile. 695 713 IPR001763 -
Lsi04g00663 792 PRINTS Urea amidohydrolase (urease) protein signature 650 665 IPR005848 GO:0006807|GO:0009039|GO:0016151
Lsi04g00663 792 PRINTS Urea amidohydrolase (urease) protein signature 586 602 IPR005848 GO:0006807|GO:0009039|GO:0016151
Lsi04g00663 792 PRINTS Urea amidohydrolase (urease) protein signature 676 689 IPR005848 GO:0006807|GO:0009039|GO:0016151
Lsi04g00663 792 PRINTS Urea amidohydrolase (urease) protein signature 547 564 IPR005848 GO:0006807|GO:0009039|GO:0016151
Lsi04g00663 792 CDD Urease_gamma 37 133 IPR002026 GO:0016151|GO:0043419
Lsi04g00663 792 Pfam Urease beta subunit 136 200 IPR002019 GO:0035550|GO:0043419
Lsi04g00663 792 TIGRFAM urease_alph: urease, alpha subunit 244 720 IPR005848 GO:0006807|GO:0009039|GO:0016151
Lsi04g00663 792 Gene3D - 371 676 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00663 K01427 URE; urease [EC:3.5.1.5] - qsu:112022271 1126.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00662 Lsi-Chr4:6037242 Lsi04g00663 Lsi-Chr4:6051159 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00663 Lsi_Chr04 FPKM 17.465405 18.558884 10.088806 10.485005 13.597909 14.575271 13.970605 10.986542 11.062672 9.66731