Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00664 ATGCGAACGCCGGAAAATTCGAATGGTCAATTTCAAATTATCCGAATTGCTGGTGATGGAAGATGTTTGTTTCGATCAGTGGTTCATGGTGCTTGTCTCAGATCGGGGAAGCCGGCTCCAAGTGAAGTTGTTCAAAAAGAGCTTGCAGACGAGCTCAGGGAAAACGTTGCGAATGAGTTGATGAAGAGGCGTTTGGACACTGAACGGATGCCAATCTCAGTCTATATGTGGGACAAGAACTCGGGAAATCTCAAGGTCATAGCTGAGTATGGGCAGGAGTACGGCAAAGAAAATCCTATCCGCGTCCTTTTTCACAGCTACGGACATTACGATTCATTGAAGGCTCCACACAATTAA 357 45.94 MRTPENSNGQFQIIRIAGDGRCLFRSVVHGACLRSGKPAPSEVVQKELADELRENVANELMKRRLDTERMPISVYMWDKNSGNLKVIAEYGQEYGKENPIRVLFHSYGHYDSLKAPHN 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6067578 6071856 - Lsi04G006640.1 Lsi04g00664 660713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00664 118 Pfam OTU-like cysteine protease 18 66 IPR003323 -
Lsi04g00664 118 PANTHER OS01G0900900 PROTEIN 69 117 - -
Lsi04g00664 118 ProSiteProfiles OTU domain profile. 11 116 IPR003323 -
Lsi04g00664 118 SUPERFAMILY Cysteine proteinases 11 116 IPR038765 -
Lsi04g00664 118 Gene3D - 68 118 - -
Lsi04g00664 118 PANTHER OTU DOMAIN CONTAINING PROTEIN 9 68 - -
Lsi04g00664 118 PANTHER OTU DOMAIN CONTAINING PROTEIN 69 117 - -
Lsi04g00664 118 PANTHER OS01G0900900 PROTEIN 9 68 - -
Lsi04g00664 118 Gene3D - 2 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00664 K18342 OTUD6; OTU domain-containing protein 6 [EC:3.4.19.12] - csv:101209836 188.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00128 Lsi-Chr4:1442396 Lsi04g00664 Lsi-Chr4:6067578 1.25E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1176 . . . . . . . . . Cmo18g00699 . Cma18g00711 . Car18g00656 . Cpe09g00578 . Bhi07g01897 . . . Hepe10g1531 . . . . . . . . . . . Cone8ag0739 . Lsi04g00664 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01356 . Cec11g1440 . Clacu11g1571 Cmu11g1391 Cre11g1812 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000657 2 7 1 4 3 2 4 2 3 3 3 3 3 3 3 4 3 4 4 3 3 3 2 2 2 3 2 8 5 3 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00664 Lsi_Chr04 FPKM 15.236341 17.354116 12.727521 11.64443 35.512199 40.532642 34.915558 9.555547 8.599283 8.410726