Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00665 ATGGAAGATCACCTGCAGAATGTTGGAACGATAAAAGAGTATGCCCTAACGTTGCTATCACGGAGAATCGAATCCGGTGCCTTCTCGGACTCTGGTAGCTCTTACACTTCCTTCGCCGCTTCATCAATGGTGGCTCGAACAATGATCTCCGAAACCCACTCAATCATCTCCCAAATCATTCCCCAAAAACTCCGCGACCAAATCTCCTCCAAATTCAACTCCATTTTTGGTTCCATTTCCTCTCAATTCGTTCTCATTATCGAAGAAAACAACGGAATCGCCATTAACGAGCTTTACAGAGCATCCGAAACTTACCTCTCTACAAAAATCTCCCCATCCCTAAAGCATCTCAAGGCTTCCAAGGTTCCTGGAGAGAGCAATTTAACGTTCAAAATCAACAAAGGCGATGTACTAATCGACGTATTCGAAGGAATCGAAATCGCCTGGGAATTGATTTCCACAGAAAAACAGAGCACTTATTTCGACTTCGAAATCGCTACTCAAACAACCGAAACAACCGAGAAACGGCATTACCAAATCAGCTTCAGCAAGAAACACCAAGATTTGGTAATGAAGATTTACCTTCCGTTCATTCTGGACAGAGCAAAAGCCATAGAGGAAGAAAACAGAGTGGTGAAGCTTTATGCGTTAATGGGGGGATATGCGAATGGGGATTCGATTGTTCTGCAGAACAGTTGTAGTTTTGGGAATTTGGCTATGGATGGGAAGAAGAAGAGGGAATTGATGGATGATTTGGATAGATTTGTGAGAAGAAAGGATTTTTATAGGAGGATTGGGAAGGCTTGGAAAAGAGGGTATCTTCTTTATGGGCCACCGGGAACAGGGAAATCAAGCTTGGTGGCGGCCATGGCGGATTATCTGAAGTTTAATATTTATGATTTGGAGCTTACCAGTGTTCAGACAAACTCGGCGCTCAGGACGATGCTGTTGTGCACTGCTGATAGGTCCATTATTGTGATTGAGGATATCGATTGCAGCGCTGAGCTTCAGGACCGTAAAAATGGCGGACGTGACGGCGGTGACAGCCAGTTGACTTTGTCTGGAGTGTTAAACGTCATAGATGGGCTATGGTCAAATTGTGGAGATGCAAGAATAATAGTTTTCACAACAAACCATAAGGAAAAATTGGATCCTGCATTGTTAAGACCAGGGCGTATGGATATGCACGTGCACATGACATATCTGACTCCTTCCGGATTTGAAATTCTAGCCTCTAACTATTTGCAAATCAATCACCATCAACGTTTCAAAGAAATTAAAGACCTTATCATGGAGGTGGAGGTCACACCTGCAGAAATTGCAGAGGAGCTCATGAAAAGTGACGATGCTGATGTGGCACTTGAATCTGTCGTTGAATTCATCAACGGGAAGAAAAGGATGAAGATGGAGAAAGAGTGTAATTCTGAAGTGATCGAAAAGGTTGATTGTCAGAGACCCCAAGACAATGAAAAAGAAGATCATTTAAAGGAGAAAAAGAGAAGTAAAAGAAGACGAAACAGATGGAGTCGACCATGA 1536 43.03 MEDHLQNVGTIKEYALTLLSRRIESGAFSDSGSSYTSFAASSMVARTMISETHSIISQIIPQKLRDQISSKFNSIFGSISSQFVLIIEENNGIAINELYRASETYLSTKISPSLKHLKASKVPGESNLTFKINKGDVLIDVFEGIEIAWELISTEKQSTYFDFEIATQTTETTEKRHYQISFSKKHQDLVMKIYLPFILDRAKAIEEENRVVKLYALMGGYANGDSIVLQNSCSFGNLAMDGKKKRELMDDLDRFVRRKDFYRRIGKAWKRGYLLYGPPGTGKSSLVAAMADYLKFNIYDLELTSVQTNSALRTMLLCTADRSIIVIEDIDCSAELQDRKNGGRDGGDSQLTLSGVLNVIDGLWSNCGDARIIVFTTNHKEKLDPALLRPGRMDMHVHMTYLTPSGFEILASNYLQINHHQRFKEIKDLIMEVEVTPAEIAEELMKSDDADVALESVVEFINGKKRMKMEKECNSEVIEKVDCQRPQDNEKEDHLKEKKRSKRRRNRWSRP 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6071816 6076351 + Lsi04G006650.1 Lsi04g00665 660714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00665 511 MobiDBLite consensus disorder prediction 484 511 - -
Lsi04g00665 511 Pfam Domain associated at C-terminal with AAA 60 152 IPR025753 -
Lsi04g00665 511 Pfam ATPase family associated with various cellular activities (AAA) 274 399 IPR003959 GO:0005524|GO:0016887
Lsi04g00665 511 PANTHER - 33 483 - -
Lsi04g00665 511 PANTHER BCS1 AAA-TYPE ATPASE 33 483 - -
Lsi04g00665 511 ProSitePatterns AAA-protein family signature. 371 389 IPR003960 GO:0005524|GO:0016887
Lsi04g00665 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 450 IPR027417 -
Lsi04g00665 511 Gene3D - 398 467 - -
Lsi04g00665 511 Gene3D - 226 397 IPR027417 -
Lsi04g00665 511 SMART AAA_5 269 403 IPR003593 -
Lsi04g00665 511 CDD AAA 270 401 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00665 - - K08900 qsu:112018277 546.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00665 Lsi-Chr4:6071816 Lsi04g01695 Lsi-Chr4:24348263 6.05E-144 dispersed
Lsi04g00665 Lsi-Chr4:6071816 Lsi07g00245 Lsi-Chr7:2676561 1.12E-149 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g00665 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000531 0 2 1 2 1 4 1 7 5 4 3 5 2 3 7 3 5 0 1 5 5 2 3 6 7 7 5 5 5 5 111
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00665 Lsi_Chr04 FPKM 6.809876 6.407017 4.664127 4.420874 3.803597 6.573895 7.40802 1.230115 2.328225 0.838404