Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00666 ATGGAAATGGAAGGTCTCAGTTGCTGCAACGGCGGGGGTGGGGGTTCGGTTTATTTCCGCTTGAAATCTCTGTTTCAACTGCTCTTTTTTGGCAACTCAGATGACATAGATTTCCTTGATGAACATAAAATTATGGATGTTCCCGAGGTTGAAGAAATATTTTTTGCTGCCGGTGATGCCAAGTTGCATGGAGAAATGTACAAGAAACTCGCTGCAATTTATGGCCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCCGCACGACCCAGGAGCAAAACTGGTATCCAGGCTTTATGTTCATTACATGTAGCTCTTGAGAAGACCAAGAATACTCTCCGGCATTGCTCAGAATCCAGTAAACTCTACTTGGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAAAAAGCAAGATGTTCTCTTGAAGTTAGTCTTATATGCGTAGAAGATATTGTCTCACAATCAATTGGATTTCAGATTCAGCAGATAGTGAACGAACTCAAGGACACTGTTTTCTTACTTGATCCACTTGAGAAACAAGTTGGTGATGATATCATTGCATTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGCCACAATGAGCTGGAGCATTTTCATCAGGCTGCCACGAAACTTGGAATTACTTCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGAATTGTAGAACGCGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTACCTTTTGCATCTGATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGTTGACAGATGACACCGATTCACAGGGTGGGTCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGACAATGGACTTGCAGCGAATGGTAAAGTCTTTGAACACCAGCTTTCGAAGCTTAGTTCTTTTAATTTCAAGCCGAATTATAGGATATCAGGACAGATGCCTCTTCCACCTGAGGAATTAAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTCATAATTGATTCTGGGCAAACATATGAAAGGATCTGTATAGAGAAGTGGTTCAGTGATGGTCATATGACCTGCCCGAAGACTCAACAGAGGCTCTCCCACCTGTCTTTGACGCCTAATTACTCTGTCAAGGGTCTCATTGCTAATTGGTGTGAACATAACGGAGTTCCTATCCTGGATGGTCCACCAAAGTCACTTGATCTGAATTATTGGAGGCTTGCATTGTCTGATTCTGAGTCCGGGAAATCAAGATCTGTAGACAATGTTGGCTCTCACACATTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGGAACAATTAAGGTTGCTGAAGAAAATGAAGCAGATGATAATACATACATGGAGGAGTCATCTGATTTTATTACACTGGAGAGTTGTGTAAATTTTATGGCAGTATTGACTGAAGAGGGAGACTTGAGAAAAAAATGTAAGGTTGTGGAGCAGATAAGACTTTCATTGAAGGATGATGATGAAGCTCGCATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGAATTCCTAACTTTAGCTCTTATTGAAGAAGATGCTGATGCTCAGGAAACTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAACAGGGAAATGATGATAGCGGCAGGTGTAATCTCGTTGTTGGAGAACATGATTTTGAAATCCAATTTACATGGACCTGCAACAGCTCTATATTTGAATCTTTCTTGCCTAGAAGATGCCAAACCTATAATTAGTTCGAGTACAGCCGTTCCTTTCCTGATCCAGCTGCTTACTTGTAATGGTGAATCCCAAACCAAGCTCGATGCACTTCATACCCTTTATAACCTTTCAACCACGCCCTCTGTCATTCCTGTCCTTTTTAATGCTGGTATTGTCGGTGGACTTCAATCCTTTCTCACAGCTCCCAGCGACAGCATGTGGACAGAGACTTCCTTGGCCATCTTAATGAACTTAGCTTCGAGCCAGTTAGGGATAGAAGAAATAGCTTCAGCTCCTGAGCTTATCAGTGGGTTGGCAGCAATCGTGGATGCTGGCGAACGTGCCGAGCGGGAGCAAGCTGTATCGTGTTTGTTGATTTTGTGTAGAGGGAGTGAAAAATGCAGTCAAATGGTCTTACAGGAAGGAGTGATTCCGGGATTGGTTGCGATTACGGTAAATGGAACTTCAAGAGGGAAGGTAAAAGCTCAAAAACTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAGGATACTGATATCATTCAGCAGCGAGATGGAAATAGCGACACAGCCATGGCTGCTCCAGATTCTAAGCCACTTTGCAAATCAGTGTCAAAGAAAAAGATGGGGAAAGCGCTAAGCTTTTTTGCAAGGAGCAAACGATTTTCACTATACCAATGTTAA 2436 42.49 MEMEGLSCCNGGGGGSVYFRLKSLFQLLFFGNSDDIDFLDEHKIMDVPEVEEIFFAAGDAKLHGEMYKKLAAIYGQVMSIFPSLEAARPRSKTGIQALCSLHVALEKTKNTLRHCSESSKLYLAITGDAVLAKFEKARCSLEVSLICVEDIVSQSIGFQIQQIVNELKDTVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRIVERARLEEDKRKESIVAYLLHLMRKYSKLFRSELTDDTDSQGGSTPCSPTVRCSLEDNGLAANGKVFEHQLSKLSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHMTCPKTQQRLSHLSLTPNYSVKGLIANWCEHNGVPILDGPPKSLDLNYWRLALSDSESGKSRSVDNVGSHTLKEVKVVPLEESGTIKVAEENEADDNTYMEESSDFITLESCVNFMAVLTEEGDLRKKCKVVEQIRLSLKDDDEARILMGANGFAEALMEFLTLALIEEDADAQETGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIISSSTAVPFLIQLLTCNGESQTKLDALHTLYNLSTTPSVIPVLFNAGIVGGLQSFLTAPSDSMWTETSLAILMNLASSQLGIEEIASAPELISGLAAIVDAGERAEREQAVSCLLILCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKVKAQKLLMLFREQRQKDTDIIQQRDGNSDTAMAAPDSKPLCKSVSKKKMGKALSFFARSKRFSLYQC 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6078552 6083307 - Lsi04G006660.1 Lsi04g00666 660715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00666 811 SUPERFAMILY RING/U-box 318 399 - -
Lsi04g00666 811 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 45 773 - -
Lsi04g00666 811 SMART Ubox_2 327 390 IPR003613 GO:0004842|GO:0016567
Lsi04g00666 811 Gene3D - 581 760 IPR011989 -
Lsi04g00666 811 SMART arm_5 504 548 IPR000225 GO:0005515
Lsi04g00666 811 SMART arm_5 550 588 IPR000225 GO:0005515
Lsi04g00666 811 SMART arm_5 589 630 IPR000225 GO:0005515
Lsi04g00666 811 CDD RING-Ubox_PUB 328 370 IPR045210 -
Lsi04g00666 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 397 IPR013083 -
Lsi04g00666 811 Gene3D - 478 580 IPR011989 -
Lsi04g00666 811 ProSiteProfiles U-box domain profile. 323 397 IPR003613 GO:0004842|GO:0016567
Lsi04g00666 811 Pfam U-box domain 325 394 IPR003613 GO:0004842|GO:0016567
Lsi04g00666 811 SUPERFAMILY ARM repeat 483 741 IPR016024 -
Lsi04g00666 811 PANTHER U BOX DOMAIN-CONTAINING 45 773 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00666 Lsi-Chr4:6078552 Lsi07g00257 Lsi-Chr7:2817688 1.20E-69 dispersed
Lsi04g00666 Lsi-Chr4:6078552 Lsi08g01601 Lsi-Chr8:23977495 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00666 - - csv:101210079 1436.4