Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00668 ATGATGATGAAGAATCTGTTGTTTCTGGTCTTGATTTTTCAGTTTCAGGTCGCGTTTAGGGTTTTAGCCCTCTCGCCGGACGGTCTCTCGCTTCTCTCTCTCAAGTCGGCGATTGACCAGTCGCCGGATTCCTCTGTTTTCTCTGATTGGAACGAGGATGACTCCACGCCTTGCCGATGGTCTGGCATTTCTTGCATGAATGTTTCTGGTGACTCGCGAGTCGTTGGAATTGCTCTCTCTGGTAAGAATCTCCATGGCTACATTCCTTCTGAACTCGGCTCGCTTGTTTATCTCCGGCGATTGAACCTCCATAACAACAATCTCTACGGCTCGATACCTGAACAGTTGTTTAATGCTACCTCATTGCATAGCCTATTTCTCTACAGTAATAATTTCTCCGGTCCTTTTCCCCCTTCGATCTGCAACATTCCGAGGCTTCAAAACCTCGATCTCTCCAACAATTCTCTCGCCGGACCACTCCCCGACGAATTGAAGAATTGTAAGCAATTGCAGCGATTAATACTCGCTAGAAATCAATTCGACGGAGAAATACCGTCTGGTGTTTGGTCCGGGATGGATAATTTACTTCAACTCGATCTCTCATCCAACGATTTCAGCGGATCGATTCCAGAGGATCTAGGGCAACTGAAGACTCTTTCCGGTACGCTCAACCTCTCCTTCAATCATTTATCAGGTAAAATCCCGAAAACTCTCGGAGATTTGCCGGTGACGGTGAGTTTCGACCTCCGAAGCAACAATTTAAGCGGAAGCATACCTCAGACAGGTTCTTTTGCGAATCAAGGACCGACTGCTTTTCTCAATAATCCCGAGTTATGCGGATTTCCTCTTCAAAAATCTTGTGAGAATTCAGAACGTGGTTCACCAGGAAATCCGGATTCTAAGCCATCTTACATTTCCCCTAGAAAAGGATTGAGCGCCGGATTAATCATTCTCATTTCTGCTGCCGACGCCGCCGGAGTAGCGTTTATCGGCCTGGTAATAGTATACGTATATTGGCGACGGAAGGACAATTCGAATGGCTGTAGCTGTACGGCCAAAAGAAAATTCGGCGGGAATCAGAAAGATCATCTCTGCAATTTTCCTTGTATGAATGGACATGATAAGAACGAGGAATCGGAAATGGAGGAACCGGAGAACAGTGACAGAAGCAGAGAGGAAGGAGGACTTGTGGCCGTAGACAAAGGCTTTACGTTCGAGCTCGACGAGCTGCTGAGAGCTTCGGCGTATGTGCTGGGAAAGAGTGGACTGGGAATTGTGTACAAAGTGGTCCTCGGAAATGGGATTCCGGTGGCTGTACGGCGGTTGGGCGAAGGCGGAGAACAGAGGTATAAGGAGTTCGCGGCGGAGGTACAGGCCATTGGAAGGGTAAAGCATCCTAATATTGTGAAACTGAGAGCTTATTATTGGGCGCCGGACGAGAAGCTTCTGATCAGTGATTTTATCTCCAATGGGAACTTGGCCTCTGCACTTCGCGGGAAGAACGGGCAGCCTTCTTCAATCCTTTCATGGTCAACAAGATTACGAGTAGCCAAGGGAACCGCCAGGGGATTGGCCTATTTACACGAATGCAGCCCAAGAAAATTCGTCCATGGCGACATCAAGCCCTCCAACATTCTCCTCGACAACGATTTCCAGCCTCACATCTCCGACTTCGGCCTCAACCGCTTGATCAGCATCACCGGCAACAACCCCTCCTCCTCCGGCGGCCTCATCGGCGGCGCCTTCTCCTACCTCAAGTCCGTCCAAACCGACCGCACCAATAACTACTGCGCCCCGGAGGCCCGAGCCCCCGGCGGCCGCCCCACCCAAAAATGGGATGTCTATTCCTTCGGCGTCATGGTCCTCGAATTGCTCACCGGAAAGTCGCCGGAGCTTTCTCCGAACACGTCTACTTCTTTGGAGATTCCAGATTTGGTGAGATGGGTCAGGAAAGGGTTTGAAGAAGCAAAGCCATTGTCGGATTTGGTTGACCCTGCTCTGTTACAAGAAGTACATGCTAAGAAAGAAGTACTCGCCGTATTCCACGTGGCGCTCGCTTGTACAGAGAGCGACCCGGAAATTCGGCCCAGAATGAAGACGGTGTCGGAGAGTTTCGACAGGATTGGATCGTGA 2133 49.93 MMMKNLLFLVLIFQFQVAFRVLALSPDGLSLLSLKSAIDQSPDSSVFSDWNEDDSTPCRWSGISCMNVSGDSRVVGIALSGKNLHGYIPSELGSLVYLRRLNLHNNNLYGSIPEQLFNATSLHSLFLYSNNFSGPFPPSICNIPRLQNLDLSNNSLAGPLPDELKNCKQLQRLILARNQFDGEIPSGVWSGMDNLLQLDLSSNDFSGSIPEDLGQLKTLSGTLNLSFNHLSGKIPKTLGDLPVTVSFDLRSNNLSGSIPQTGSFANQGPTAFLNNPELCGFPLQKSCENSERGSPGNPDSKPSYISPRKGLSAGLIILISAADAAGVAFIGLVIVYVYWRRKDNSNGCSCTAKRKFGGNQKDHLCNFPCMNGHDKNEESEMEEPENSDRSREEGGLVAVDKGFTFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVAVRRLGEGGEQRYKEFAAEVQAIGRVKHPNIVKLRAYYWAPDEKLLISDFISNGNLASALRGKNGQPSSILSWSTRLRVAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFQPHISDFGLNRLISITGNNPSSSGGLIGGAFSYLKSVQTDRTNNYCAPEARAPGGRPTQKWDVYSFGVMVLELLTGKSPELSPNTSTSLEIPDLVRWVRKGFEEAKPLSDLVDPALLQEVHAKKEVLAVFHVALACTESDPEIRPRMKTVSESFDRIGS 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6110513 6119608 + Lsi04G006680.1 Lsi04g00668 660717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00668 710 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 7 709 - -
Lsi04g00668 710 Gene3D Ribonuclease Inhibitor 26 187 IPR032675 -
Lsi04g00668 710 Pfam Protein kinase domain 417 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00668 710 Gene3D Transferase(Phosphotransferase) domain 1 488 710 - -
Lsi04g00668 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Lsi04g00668 710 SUPERFAMILY L domain-like 29 284 - -
Lsi04g00668 710 CDD STKc_IRAK 418 708 - -
Lsi04g00668 710 Gene3D Ribonuclease Inhibitor 188 289 IPR032675 -
Lsi04g00668 710 Gene3D Phosphorylase Kinase; domain 1 404 487 - -
Lsi04g00668 710 SUPERFAMILY Protein kinase-like (PK-like) 417 702 IPR011009 -
Lsi04g00668 710 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Lsi04g00668 710 ProSiteProfiles Protein kinase domain profile. 412 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00668 710 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 709 - -
Lsi04g00668 710 SMART serkin_6 416 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01904 Lsi-Chr1:22626401 Lsi04g00668 Lsi-Chr4:6110513 7.35E-170 dispersed
Lsi04g00668 Lsi-Chr4:6110513 Lsi09g00625 Lsi-Chr9:6888963 0 dispersed
Lsi09g00545 Lsi-Chr9:5731454 Lsi04g00668 Lsi-Chr4:6110513 3.69E-69 dispersed
Lsi04g00668 Lsi-Chr4:6110513 Lsi04g00224 Lsi-Chr4:2329328 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83566 PF00069 Pkinase 2.30E-32 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00668 - - csv:101220493 1355.5