Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00673 ATGGCTGTGGGAAGTCATCGGACGGCTGAGATTTTACGTGTGAATTCTTCCGAATCAGGACCGAAATCAATTGACATATCATCGTTTCCTCCAGCTGATCATTCCCCTTTGGACTTAACATCGTCGTCTCCAAATTCGCCGACAGTTAAATCTTCCTATGGAGTTATGACTAATCTTTCTTCATTGGCGTTCTACGCCTCCTTCCGGGTTGGATCTGACGATTATCTTCTTGTTTTCCATATGGACTGGCAAGGGCAAAAGCTAGCGGAGCAGTTGATGCAGATTATGTTGGTTGCATTTGCCGTGGTGGCCTTTTTGACTGGCTATGTTATGGGATCGTTTCGGCTGATGATCTTGGTTTACGCTGGCGGTGTGTTTCTCACCACATTAATCACTGTTCCGAATTGGCCTTTCTTCAATCGCCACCCGCTCAAGTGGTTGGATCCTAGTGTGGCTGAAAAATACCCTAAGCCGCAACCGCAGGAGCCTGTGGTTTTGAAGAAGAAACCTGCCAAGAAGCCAGCTCTAATCTCACGGGACAACCCACTTGACCCTACAATATTTGGGTGTCAAGGAAACCCATATGATATCATTGCAATTTACATTATC 609 46.14 MAVGSHRTAEILRVNSSESGPKSIDISSFPPADHSPLDLTSSSPNSPTVKSSYGVMTNLSSLAFYASFRVGSDDYLLVFHMDWQGQKLAEQLMQIMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFNRHPLKWLDPSVAEKYPKPQPQEPVVLKKKPAKKPALISRDNPLDPTIFGCQGNPYDIIAIYII 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6166414 6167648 - Lsi04G006730.1 Lsi04g00673 660722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00673 203 PANTHER MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT 79 173 IPR009542 GO:0005787|GO:0006465|GO:0016021
Lsi04g00673 203 Pfam Microsomal signal peptidase 12 kDa subunit (SPC12) 81 150 IPR009542 GO:0005787|GO:0006465|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00673 K12946 SPCS1; signal peptidase complex subunit 1 [EC:3.4.-.-] - csv:101211317 184.111
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02315 Lsi-Chr2:29748976 Lsi04g00673 Lsi-Chr4:6166414 2.17E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1222 . . . . . . . . . Cmo18g00694 . Cma18g00705 . Car18g00651 . Cpe09g00583 . . . . . . . . . . . . . . . . . . . Lsi04g00673 . . Cme10g00650 . . . . . . . . . . . . . Car04g01844 . . . . . . . . . . Cla11g01348 Cam11g1406 Cec11g1432 Cco11g1426 Clacu11g1563 Cmu11g1384 Cre11g1804 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008309 1 1 1 1 1 0 2 1 1 0 2 2 1 1 1 1 2 1 1 2 1 1 0 0 1 2 2 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00673 Lsi_Chr04 FPKM 3.653258 4.257193 8.622805 8.349837 6.126025 3.703495 5.683982 10.18116 9.978114 10.498743