Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00676 | ATGGCGGACGATTCCCACAAGAAGAACATACTCCAGAGCACCGCTCTTCTCCAGTATATACTGGAAGCCAATGCCTATCCGAGAGAGCATGAACAGTTGAAGGAACTCAGGGAATCAACCTTCGAGAAATTTGACAAGAACATGAGTTTGATGAATGTACCGGCGGATGAAGGATTGTTTCTATCAATGCTTTTGAAATTGATGAACGCAAAGAAAACGATAGAGATAACAGCAATTGATGTGAATAGACGATCGTTCGAATTTGGTTTGCCATTTATAAAAAAGGCGGGAGTTGATCATAAGATCAATTTTGTGGAATCCCAAGCATTGGTTGCTCTGAATGACCTCCTCAATGATGGTAAAGAAGAAGAGTTTGATTTTGCATTTGTTGATGCCAAAAAATCGGAGTACATTAAATATCACGAGTTGCTTCTAAAACTGGTGAAGGTAGGTGGAGTAATTGCCTATGATAACACTCTATGGTTTGGATCAGTGGCGCTAAGCGATGACGCCGTCCATGAAGATTTGAAGGAGAACAGAAGTCATATACAACAACTCAATGCTTTTCTAGTAAATGACATGCGGGTGGAGATAGCTCTCCTATCTGTTGGAGATGGTGTCACTCTTTGCAGGCGTATCAAATAA | 645 | 40.93 | MADDSHKKNILQSTALLQYILEANAYPREHEQLKELRESTFEKFDKNMSLMNVPADEGLFLSMLLKLMNAKKTIEITAIDVNRRSFEFGLPFIKKAGVDHKINFVESQALVALNDLLNDGKEEEFDFAFVDAKKSEYIKYHELLLKLVKVGGVIAYDNTLWFGSVALSDDAVHEDLKENRSHIQQLNAFLVNDMRVEIALLSVGDGVTLCRRIK | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 6185301 | 6188956 | + | Lsi04G006760.1 | Lsi04g00676 | 660725 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00676 | 214 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 16 | 212 | IPR029063 | - | |
| Lsi04g00676 | 214 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 1 | 213 | IPR002935 | GO:0008171 | |
| Lsi04g00676 | 214 | Pfam | O-methyltransferase | 76 | 213 | IPR002935 | GO:0008171 | |
| Lsi04g00676 | 214 | PANTHER | O-METHYLTRANSFERASE-RELATED | 76 | 213 | - | - | |
| Lsi04g00676 | 214 | PANTHER | O-METHYLTRANSFERASE-RELATED | 6 | 76 | - | - | |
| Lsi04g00676 | 214 | PANTHER | FLAVONOID 3',5'-METHYLTRANSFERASE-LIKE | 6 | 76 | - | - | |
| Lsi04g00676 | 214 | PANTHER | FLAVONOID 3',5'-METHYLTRANSFERASE-LIKE | 76 | 213 | - | - | |
| Lsi04g00676 | 214 | Gene3D | Vaccinia Virus protein VP39 | 1 | 76 | IPR029063 | - | |
| Lsi04g00676 | 214 | Gene3D | Vaccinia Virus protein VP39 | 77 | 214 | IPR029063 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g00494 | Lsi-Chr3:5668382 | Lsi04g00676 | Lsi-Chr4:6185301 | 1.16E-66 | dispersed | |
| Lsi04g00676 | Lsi-Chr4:6185301 | Lsi05g00223 | Lsi-Chr5:2997201 | 2.67E-42 | dispersed | |
| Lsi04g00676 | Lsi-Chr4:6185301 | Lsi04g00677 | Lsi-Chr4:6190613 | 1.62E-34 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00676 | K00588 | K13272 | csv:101212121 | 329.717 |