Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00679 ATGAAGCTCCTTATTCTGGCCACCCTCACCATCTCACTCCTTTTCCCTTTCAGCCTTCTCAATTTCCTCATCTTTTGCTCTCTCCTCGCCCTCTCTCTCAACTTCTGGCTCATCCCCGGTGGATTTGCGTGGCGTAACCACCACCGCTCCTCTGTCAACCTCCCTGGTCCCTCCGGTTGGCCACTTCTTGGCACACTCCCCCTAATGGGACCGCTTGCTCACCAGAATCTCGCTACCATTGCTCAATCCTTCAAAGCCACACGCCTTATGTCCTTTAGCTTGGGTGCCACTCGAGCCATCATAAGCAGTCACCCTGACACGGCCAAGCAGATTCTCTGCGGGTCGGCTTTCTCCGACCGACCAATCAAGCAATCGGCTCGGCTCATGATGTTCGAGAGAGCCATTGGCTTTGCTCCAAATGGGGACTATTGGCGCAATCTTCGACGAATTGCCGCAAACCACATGTTCTCCCCACGGAGAATCTCCGACCTGGAGGGGCTCCGTATGGAGGTGGCGGATGAAATGGTGGTGGAGGTGTCGGGAAATATGGTGGCAGAGGGGGTGGTGAGGCTGAGAGATGTGCTGCAGAAGCATTCTTTGAAGAACATAATAGAGAGTGTGTTTGGGAGTGGTTTGGGGATGGGGAGGAATGAAGAGCTGAGTGATATGGTGAGAGAAGGGTATGAATTGATAGCGATTTTCAATTGGGAAGATTATTTGCCGGTCAGCTTTTTGGATTTTGGTGGAGTGAAACGAAGGTGCAATGAATTGGCGGGCAGGGTTAATGTGGAAATGATCTTTCGTGGAACCGACACGATAGCAATACTTCTAGAATGGATAATGGCCAGGATAATATTACACCCAGATATCCAAGCCAAAGCTCAAAAGGAGATTGACACGTGCGTTGGGTGTAATAGGCACGTGCGCGATTCCGACATTCCGAACCTTCCTTACGTCCAAGCAATAGTGAAAGAAGTGCTTCGTCTACACCCACCAGGGCCATTACTGTCGTGGGCCCGTTTAGCAATCCACGATGTCCACGTGGACAAGATCTTAATCCCAGCTGGCACAACGGCAATGGTGAACATGTGGGCCATAGCCCACGACCCTTCGATATGGAAAGACCCATGGACATTTAAGCCGGAACGGTTCATTGAAAACGACATGTCGATTATGGGGTCGGACTTGAGATTGGCACCGTTCGGAGCTGGTCGAAGGGCGTGCCCAGGAAGGGCCTTGGGTTTAGCCACTGTGCACCTATGGCTAGCCACTTTTCTGCAACGGTTCAGATGGGTTCCATGTTCCTCCACTAAGTCGGTTAATTTGTCGGAGTGTTTGAAGCTATCCCTTGAAATGAAGAAGCCTCTGAATTGTCGTGTGGTTAGTCGGTGA 1392 51.29 MKLLILATLTISLLFPFSLLNFLIFCSLLALSLNFWLIPGGFAWRNHHRSSVNLPGPSGWPLLGTLPLMGPLAHQNLATIAQSFKATRLMSFSLGATRAIISSHPDTAKQILCGSAFSDRPIKQSARLMMFERAIGFAPNGDYWRNLRRIAANHMFSPRRISDLEGLRMEVADEMVVEVSGNMVAEGVVRLRDVLQKHSLKNIIESVFGSGLGMGRNEELSDMVREGYELIAIFNWEDYLPVSFLDFGGVKRRCNELAGRVNVEMIFRGTDTIAILLEWIMARIILHPDIQAKAQKEIDTCVGCNRHVRDSDIPNLPYVQAIVKEVLRLHPPGPLLSWARLAIHDVHVDKILIPAGTTAMVNMWAIAHDPSIWKDPWTFKPERFIENDMSIMGSDLRLAPFGAGRRACPGRALGLATVHLWLATFLQRFRWVPCSSTKSVNLSECLKLSLEMKKPLNCRVVSR 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6214116 6217586 + Lsi04G006790.1 Lsi04g00679 660728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00679 463 PANTHER CYTOCHROME P450 78A7-RELATED 263 463 - -
Lsi04g00679 463 PANTHER CYTOCHROME P450 FAMILY PROTEIN, EXPRESSED 7 262 - -
Lsi04g00679 463 PANTHER CYTOCHROME P450 FAMILY PROTEIN, EXPRESSED 263 463 - -
Lsi04g00679 463 PANTHER CYTOCHROME P450 78A7-RELATED 7 262 - -
Lsi04g00679 463 SUPERFAMILY Cytochrome P450 55 463 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00679 463 Gene3D Cytochrome P450 259 463 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00679 463 Gene3D Cytochrome P450 43 258 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00679 463 PRINTS P450 superfamily signature 321 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00679 463 PRINTS P450 superfamily signature 399 408 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00679 463 PRINTS P450 superfamily signature 408 419 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00679 463 PRINTS P450 superfamily signature 268 285 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00679 463 Pfam Cytochrome P450 55 255 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00679 463 Pfam Cytochrome P450 264 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00679 463 PRINTS E-class P450 group I signature 277 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00679 463 PRINTS E-class P450 group I signature 320 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00679 463 PRINTS E-class P450 group I signature 398 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00679 463 PRINTS E-class P450 group I signature 362 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00679 463 PRINTS E-class P450 group I signature 408 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g00679 463 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 401 410 IPR017972 GO:0005506|GO:0016705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00679 - - - csv:101212611 833.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00679 Lsi-Chr4:6214116 Lsi09g01657 Lsi-Chr9:24994503 2.80E-143 dispersed
Lsi04g00679 Lsi-Chr4:6214116 Lsi08g00903 Lsi-Chr8:17391370 2.36E-176 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1242 . . . . . . . . . Cmo18g00685 . Cma18g00699 . Car18g00648 . . . Bhi07g01922 . . . Hepe10g1518 . . . . . . . . . . . . . Lsi04g00679 . . Cme10g00659 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01341 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012995 0 1 0 0 1 1 1 0 1 1 1 0 1 1 1 1 1 2 1 0 1 1 0 1 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00679 Lsi_Chr04 FPKM 0.558559 0.0 0.954231 0.541024 9.630944 8.738711 10.712984 0.0 0.694804 0.0