Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00681 ATGAAGTTCGTCATGGAGTTTGCTGAGAATTTGGTATTAAGACTTATGGAGGATCCTAAAGAGAGGGATCGCAAATTCAGAGAGCACGTTTACGCGGTCAAGGATCGGTGCCAAAAGACGAAGGAGATGTGGAGTTATCCTCTCCGTCCTTACGGATTTTGGACGTTTGAACGCCATAATTCTCAGCTGAATTGGGACGCACAAATTAGCCAGGCACCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACATCAACAATAACTCCAAGTGA 276 45.29 MKFVMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHNSQLNWDAQISQAPGRRDPYDDMLQDINNNSK 91
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6236427 6236702 - Lsi04G006810.1 Lsi04g00681 660730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00681 91 MobiDBLite consensus disorder prediction 71 91 - -
Lsi04g00681 91 Pfam NADH-ubiquinone oxidoreductase 11 kDa subunit 1 85 IPR035204 -
Lsi04g00681 91 PANTHER EXPRESSED PROTEIN 1 90 IPR035204 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00681 - - - csv:101213251 183.341
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1249 Blo01g00355 . Bda01g02178 . . . . . Cmo04g01930 Cmo18g00683 . Cma18g00696 . Car18g00646 Sed06g1752 Cpe09g00589 Cpe01g01615 Bhi07g01925 Tan04g0046 Cmetu10g1535 . . . . . . . . . . . . . . . Lsi04g00681 . . Cme10g00662 . . . . . . Bma01g00008 . . . . Cma04g01834 . . . . . . . . . . . . Cla11g01339 Cam11g1397 Cec11g1419 Cco11g1416 Clacu11g1554 Cmu11g1375 Cre11g1795 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009891 1 2 1 1 0 1 2 1 1 1 1 0 2 1 1 2 0 1 2 1 1 1 1 2 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00681 Lsi_Chr04 FPKM 11.611111 13.883029 11.703335 11.304649 49.328934 46.046638 46.583378 13.851383 16.266378 15.853936