Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00683 ATGGCTTCTGCTTGTGCTTCTTCCGCCATTGCGGCTGTTTCCCAGAAAAATGGGTGCCCTAAGGCTTCTAATTTCCTTACCGGCAAGAAGCTGAGGCTGAGAAACTTAACTGCAGCCGCTGCCGTTGCTCCTCGATCAGCTCCGGTATGCGCCGCAGCTGACCCCAACAGACCGCTCTGGTTCCCTGGCAGCACCCCTCCTCCATGGCTCGACGGCAGCCTTCCCGGCGACTTTGGCTTTGACCCTCTTGGTCTCGGTCAGTTGAAAATTACGTCTGATCCGGAGAGTCTGAGATGGAACCAGCAGGCGGAGCTGGTTCATTGCCGATGGGCAATGTTGGGGGCGGCCGGAATTTTCATCCCGGAATTCTTGACAAAGATCGGAATATTGAACACTCCGTCGTGGTACACCGCCGGTGAATTGGAATACTTCACCGACACAACCACTCTGTTCATCGTGGAACTCATTTTCATTGGTTGGGCTGAGGGTAGACGGTGGGCCGACATCCTCAAACCCGGTTGCGTCAACACCGACCCGATTTTCCCTAACAACAAGCTGACCGGAACCGACGTCGGGTACCCGGGCGGGCTTTGGTTCGACCCACTCGGGTGGGGCAGCGGGTCACCCGAAAAGATAAAGGAATTGAGAACGAAAGAGATAAAGAACGGGCGATTGGCTATGTTGGCGGTGATGGGAGCTTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTTTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTTTTCGCCGTGAGTTTTTAA 798 55.39 MASACASSAIAAVSQKNGCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGQLKITSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSF 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6266236 6267920 + Lsi04G006830.1 Lsi04g00683 660732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00683 265 Gene3D Chlorophyll a/b binding protein domain 67 257 - -
Lsi04g00683 265 Pfam Chlorophyll A-B binding protein 66 237 IPR022796 -
Lsi04g00683 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 263 - -
Lsi04g00683 265 SUPERFAMILY Chlorophyll a-b binding protein 52 262 - -
Lsi04g00683 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 263 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02207 Lsi-Chr3:33090052 Lsi04g00683 Lsi-Chr4:6266236 4.26E-35 dispersed
Lsi04g00683 Lsi-Chr4:6266236 Lsi06g00351 Lsi-Chr6:3836682 3.71E-91 dispersed
Lsi04g00683 Lsi-Chr4:6266236 Lsi06g01458 Lsi-Chr6:25126453 1.75E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00683 K08908 - csv:101214055 497.278