Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00686 ATGTACGGATCCGACCAAGGTATCGACGATTCCGAGCGCACCGCTTTCAGAAGAGCAGAAAAGAAATACAAATTGTACTACGACGACACCTACAAATCTTCGAAAAAGAAAAAACTACCGAAACAAGTCGATTTGTCTGAGGTTATCGATTTCAAGTGCATCCTCGAATGTTACAAACAAGATGGTGCACTTCCGCTGGGCGTGTACGCGACTAAGTGCGATCTCGATGGGCCAGTCTTCTGCTTGGAGAATCGTCCTGGGTTTTATTTTATTCCTGGAGCGTTGAGCTTACAAGAGCAATGCCAATGGATCAGGGAGAGTTTAACGAATTTCCCGCAGCCTCCTAACAGAACCAACCACAATGCTATTTATGGACCAATTAAAGACTTGTTCATTGCAGCAAAGGGAAAGAAAGTTTTAGTTGAAGATGATGAAATCTCTGATTTCAACGTTGATTCTGATGTTGAACCTTCTGTTAGCAATGGAAGTACTCATAACTGGAAGTTTGTGGAGGAGCATACTGTTTCATCCAGAAGAGGGTCGGCCTGCAAATCAATTCCTGCTTCAGTATTACTTCGAAAGTTGCGTTGGAGTACACTCGGCCTACAATTTGATTGGTCCAAGCGAAGCTATGACATATCTCTGCCCCATAATAAGATACCCTCTGCCCTTTGTCAACTCGCCAAAAGAATGGCGGCAGCTGCAATGCCAACTGGGGAAGAATTCAAGCCTGAAGCTGCAATAGTTAATTATTTTGCTTCAGGTGACACGCTTGGTGGTCACCTAGATGACATGGAAGTGGACTGGAGCAAGCCAATTGTTAGCATGAGTTTGGGTTGCAAAGCTATTTTTCTTTTGGGTGGTAAGTCGAGACAGGATCCACCCGTAGCCATGTTTCTTCGAAGCGGAGATGTTGTGCTAATGGCTGGAGAAGCAAGGGAATGTTTCCATGGTAATGTCGCCTTAATGTTCACTCTTACATCATATCAAAATGTATTTCTATATCAGATACCTGCACTTGCATTGTCCTTTTGTTTTGTTATCACCTTGGATATCTGA 1059 43.53 MYGSDQGIDDSERTAFRRAEKKYKLYYDDTYKSSKKKKLPKQVDLSEVIDFKCILECYKQDGALPLGVYATKCDLDGPVFCLENRPGFYFIPGALSLQEQCQWIRESLTNFPQPPNRTNHNAIYGPIKDLFIAAKGKKVLVEDDEISDFNVDSDVEPSVSNGSTHNWKFVEEHTVSSRRGSACKSIPASVLLRKLRWSTLGLQFDWSKRSYDISLPHNKIPSALCQLAKRMAAAAMPTGEEFKPEAAIVNYFASGDTLGGHLDDMEVDWSKPIVSMSLGCKAIFLLGGKSRQDPPVAMFLRSGDVVLMAGEARECFHGNVALMFTLTSYQNVFLYQIPALALSFCFVITLDI 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6276437 6278269 - Lsi04G006860.1 Lsi04g00686 660735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00686 352 PANTHER ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED 1 325 IPR004574 -
Lsi04g00686 352 Pfam 2OG-Fe(II) oxygenase superfamily 87 318 IPR027450 -
Lsi04g00686 352 Gene3D - 164 325 IPR037151 -
Lsi04g00686 352 SUPERFAMILY Clavaminate synthase-like 86 318 - -
Lsi04g00686 352 PANTHER ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB 1 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00686 K10765 ALKBH1; alkylated DNA repair protein alkB homolog 1 [EC:1.14.11.51 4.2.99.18 1.14.11.-] - csv:101214298 565.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00686 Lsi-Chr4:6276437 Lsi07g00623 Lsi-Chr7:6673107 8.90E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1252 . . . . . Bpe10g00765 . Bma15g00257 . . . Cma18g00693 . Car18g00643 Sed06g0154 Cpe09g00592 . Bhi07g01929 Tan04g0043 Cmetu10g1733 Lac13g0049 Hepe10g1512 . . . . . . . . . . . . . Lsi04g00686 . . Cme10g00666 Blo06g00812 . . . . . . . . . . . . . . . . . . . . . . . Cla11g01335 Cam11g1393 Cec11g1415 Cco11g1411 Clacu11g1551 Cmu11g1372 Cre11g1790 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008372 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00686 Lsi_Chr04 FPKM 8.132497 8.715355 26.611633 26.413157 102.70153 79.259613 90.001678 8.840621 9.635606 8.899701