Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00687 ATGAAGAATCGATTATCCGTCAAGCCATGGATTCTTGGATTGGCCGTTGCCGGCTTAATCGCCGGTTCACTGTTGATATCCGGATACATAGGATTTGTGGACAGTAACATATTCTGCTCCATCTCCGGCACCGGAGCACCAACAATCACCGGATATTCACCGGCGGAAATCCAGCTTCAGTCAATAATCCATTACGCGACTTCGAAAACAGTTCCGCAGCAATCACTGGACGAGATCCATATCTCATTCGACGTATTGAAGGTCCGATGTCCCTGTAATTTTCTGGTCTTCGGGCTCGGCCACGATTCGTTGATGTGGGCGTCGCTCAATCCTCTCGGAACCACGATTTTTCTTGAAGAGGATCCGAAATGGGTTCAGACGGTTCTCAAAGACGCTCCGATGCTTCGAGCTTATCACGTTCAATACCGGACGCAGCTTCAGGAGGCAGATCGGTTGCTCTCAACCTACAAATCGGAGCCGTACTGTTCGCCGACGAAGGCATTTCTTAAGGGAAATGAAAAGTGTAAGTTAGCGCTTCATAATCTTCCAGAAGAGATTTACGAGAAGGAGTGGGACCTGATAATGATCGACGCTCCAAGGGGGTATTTTGCGGAGGCTCCTGGCCGGATGGCGGCGATATTCTCCGCCGCCGTGATGGCGAGGAATAGGAAAGGATCCGGCGTTACAGATGTGTTTTTGCACGATGTTGATCGGAAAGTGGAGAGAACATTTGCGCAGGAGTTTTTATGCAAGAACAAGTATTATGTTAATGGAGTCGGAAGGTTATGGCATTTCAAGATTCCTCCGGCCGCCAATATGAGCGAAGCCGATCGAACTTCAGATCGATTTTGTTAG 855 48.89 MKNRLSVKPWILGLAVAGLIAGSLLISGYIGFVDSNIFCSISGTGAPTITGYSPAEIQLQSIIHYATSKTVPQQSLDEIHISFDVLKVRCPCNFLVFGLGHDSLMWASLNPLGTTIFLEEDPKWVQTVLKDAPMLRAYHVQYRTQLQEADRLLSTYKSEPYCSPTKAFLKGNEKCKLALHNLPEEIYEKEWDLIMIDAPRGYFAEAPGRMAAIFSAAVMARNRKGSGVTDVFLHDVDRKVERTFAQEFLCKNKYYVNGVGRLWHFKIPPAANMSEADRTSDRFC 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6287464 6288318 - Lsi04G006870.1 Lsi04g00687 660736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00687 284 TIGRFAM A_thal_3515: uncharacterized plant-specific domain TIGR01627 60 276 IPR006514 GO:0045492
Lsi04g00687 284 Pfam Polysaccharide biosynthesis 78 265 IPR021148 -
Lsi04g00687 284 Gene3D Vaccinia Virus protein VP39 67 279 IPR029063 -
Lsi04g00687 284 PANTHER OS11G0490100 PROTEIN 2 284 IPR006514 GO:0045492
Lsi04g00687 284 PANTHER BNAC02G45640D PROTEIN 2 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00687 - - - csv:105435557 567.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00302 Lsi-Chr2:2591586 Lsi04g00687 Lsi-Chr4:6287464 7.63E-70 dispersed
Lsi02g00508 Lsi-Chr2:4309285 Lsi04g00687 Lsi-Chr4:6287464 1.60E-44 dispersed
Lsi04g00687 Lsi-Chr4:6287464 Lsi11g01010 Lsi-Chr11:17132146 1.13E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1255 . . . . . . . . Cmo04g01937 . . Cma18g00691 . . Sed06g1755 Cpe09g00594 Cpe01g01620 Bhi07g01931 Tan04g0041 Cmetu10g1152 Lac13g0047 Hepe10g1510 . . . . . . . . . . . . . Lsi04g00687 . . Cme10g00670 Blo06g00811 . . . . . . . . . . Cma04g01840 . . . . . . . . . . . . Cla11g01332 Cam11g1391 Cec11g1413 Cco11g1409 Clacu11g1549 Cmu11g1370 Cre11g1788 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006445 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00687 Lsi_Chr04 FPKM 6.166667 5.230648 2.718053 1.447344 2.072914 3.773554 3.366713 0.670972 2.281629 1.301165