Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00690 ATGGCTACTTGCATTCAAAATTTGGTAGAAGATGAGGAACACATTTTCCGCAGCCAACTTCCTGAGGTCCAAGTGCCTGGTGATATCACACTGCCGGAGTTTGTACTTCAGAATGCTGAATCATATGCTGAAAATGTGGCGTTTGTGGAAGCCGTGAGCGGAAAGGCATACACTTACCGCGAAGTCGTGAGAGACACAAATAGATTTGCTAAGGCCTTGTGCTCTCTGAGGTTGAAGAAGGGGCAGGTAGTTATTGTTGTTCTACCCAATGTTGCAGAATATGCCATTGTTGCTTTAGGGATAATGGCTGCTGGAGGTGTGTTTTCTGGTGTGAATCCAGCAGCTCACATATCAGAAATCAAAAAGCAAGTGGAGGTTGCAGACGCCAAACTCGTCGTCACAAACAGTGCAAACTTTGAAAAGGTGAAGGAATTAAAGCTGCCAGTGATCTTATTGGGGGATGAACTAATTGAAGGTTCCATGAATTGGCACAAACTGCTTGAAGCTGCAGACCGTGCAGGCAACAATTTTGTTAAAGAAGATATTAAGCAGACTGATTTATGTGCCCTTCCTTTCTCATCAGGAACCACTGGGGTTTCCAAAGGTGTTATGCTAACTCACCGAAATCTAGTAGCTAATTTGTGTTCGACTCTCTCTGGTGTCCCGCAAGAAATGGTGGGCAAGGTCACGACGTTAGGTCTCATTCCGTTCTTCCATATTTATGGGATCACTGGAATATGTTGTGCCACACTTAGAAACAAGGGAAAAGTTGTGGTGATGGGAAGATTTGATCTCAGGACCTTCATTAATGCTCTCATAACACAGGAAGTCACATTTGCTCCAATTGTTCCTCCTATCATCCTGGCTTTGGTTAAGAATCCTATTGTGGAAGAATTTGATCTTAGCGGTCTCAAACTTCAGGCTATCATGACTGCAGCTGCTCCGCTCGCACCCGAGCTTCAAACTGCTTTCGAAAGAAAGTTCCCGGGCGTGGATGTTCAAGAGGCATATGGACTAACCGAGCACAGCTGCATCACTCTCAACTATGGAAGTATAGGCAAAGAGAATCTCACTGCAAAGAAAAAAACAGTTGGCCGCATTCTTCCTAATCTAGAAGTCAAATTCATCGACCCAGACAGTGGAAGGTCTCTGCCGAAGAACACTCCGGGTGAAATCTGTGTAAGAAGCCAGTGTGTGATGCAGGGCTACTACAAAAATGAAGAAGAGACTTCAAGGACGATCGATAACAAAGGCTGGATGCACACTGGGGACATTGGATACATTGATGACGATGGCGACGTGTTTATTGTGGATCGTATCAAGGAATTGATCAAATACAAAGGCTTTCAAGTTGCTCCAGCTGAGTTAGAGGCAATCCTCCTTACTCATCCCTCCATTGAAGACGCAGCTGTCGTGCCTCTGCCAGACGAAGAAGCCGGTGAGATCCCAGCAGCAAGCGTCGTGATGGCTCCAAATTCAAAAGAAACTGAAGAGGAAATAATCAAACACGTTGCCTCAAACGTCGCACATTACAAGAAAGTTAGGCTCGTTCATTTTGTGGACACTATCCCGAAGTCGCCTTCTGGGAAAGTTATGAGAAGGTTGATCAAAGAGAAGATGATCGAAAAGATTCGAGCTGAATCCGCCCTTAGATCTGTCTGA 1662 45.13 MATCIQNLVEDEEHIFRSQLPEVQVPGDITLPEFVLQNAESYAENVAFVEAVSGKAYTYREVVRDTNRFAKALCSLRLKKGQVVIVVLPNVAEYAIVALGIMAAGGVFSGVNPAAHISEIKKQVEVADAKLVVTNSANFEKVKELKLPVILLGDELIEGSMNWHKLLEAADRAGNNFVKEDIKQTDLCALPFSSGTTGVSKGVMLTHRNLVANLCSTLSGVPQEMVGKVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRFDLRTFINALITQEVTFAPIVPPIILALVKNPIVEEFDLSGLKLQAIMTAAAPLAPELQTAFERKFPGVDVQEAYGLTEHSCITLNYGSIGKENLTAKKKTVGRILPNLEVKFIDPDSGRSLPKNTPGEICVRSQCVMQGYYKNEEETSRTIDNKGWMHTGDIGYIDDDGDVFIVDRIKELIKYKGFQVAPAELEAILLTHPSIEDAAVVPLPDEEAGEIPAASVVMAPNSKETEEEIIKHVASNVAHYKKVRLVHFVDTIPKSPSGKVMRRLIKEKMIEKIRAESALRSV 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6335274 6339383 - Lsi04G006900.1 Lsi04g00690 660739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00690 553 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Lsi04g00690 553 CDD 4CL 25 534 - -
Lsi04g00690 553 Pfam AMP-binding enzyme 37 446 IPR000873 -
Lsi04g00690 553 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 543 - -
Lsi04g00690 553 PANTHER 4-COUMARATE--COA LIGASE-LIKE 1 8 543 - -
Lsi04g00690 553 Gene3D - 442 544 IPR045851 -
Lsi04g00690 553 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Lsi04g00690 553 Gene3D - 13 441 IPR042099 -
Lsi04g00690 553 SUPERFAMILY Acetyl-CoA synthetase-like 20 543 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00690 Lsi-Chr4:6335274 Lsi11g00723 Lsi-Chr11:7842942 3.29E-122 dispersed
Lsi04g00690 Lsi-Chr4:6335274 Lsi06g01133 Lsi-Chr6:21580207 2.79E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00690 K01904 - csv:101220731 1001.12