Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00708 ATGGAGACTCACTATAATCACAATCTATTCGACAGGCGACCCATTGTGAAGAACAAGTCTCCTCCTGTCAAGTGGATCAAAGAATGGGTACCCCAAGATGTCGTTGCAACTGGAGGAAAGTGCTTTCTTTTGAAATGGGTTACAGAGGATACATTAAAGGCATTAAAGGAGAAGGCAAAACAATCAGAGGCACCAGAACCTGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTATGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCATTCTCATATTCATGGGGAGAGGCAATATGTTTGTCACTATGAGGGCTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGACACTTCCTTATTCATACTGGTGAAAGAGATTTTGTTTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCTCTGGATTTCAACTTGAGATCCCATATGAAAACGCATTCACAAGAGAACTATCATATCTGTCCATACGCTGATTGTGGAAAGAGATTTGCCCACGAGTACAAACTGAAGAATCACATTACATCTCACCATGAAAAGAATGTGACAGCTGAAGTGGTCAAATATACACCACCTTCTGAGAAGCAAACTAAGGTTTCTAAACCTTCTGGAGGAGCTTATGCTTCTGCATCATCCGATCGTCCATATGCTTGCCCCTACGAAGGGTGTGAAAAGGCTTACATCCATGAATACAAGCTTAAACTCCATTTGAGAAGAGAGCATCCTGGACATCTGGTAGAAGACAATGGCAATGCTCCACATAATGGGGAAAATGAGGTAGAAGCCAGTGATCAAGATGGCTATGGTGGAAAACGGGCAAATGTAAAAAACCAGAAACAGAACAAACCTAAACCTAACTTGAAGTTACCGCCTTCAAAAATATCACAGCGAAAAGGCACGACGACTCCATCTCCTGCCCCAATGAGTGCGGTTAAAAAATCATGGCCGGTTAAAGAAGAAAACTACGAGGAAGAAGATAGCGAAGAAACGGAGGAGGAGGACCGTGAGAATGTAGAGGAGGGTTGGAGATACGCTGAAAACGAAGAAGATGACGAGGAAACAGAATATGAAGATTAA 1116 42.47 METHYNHNLFDRRPIVKNKSPPVKWIKEWVPQDVVATGGKCFLLKWVTEDTLKALKEKAKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYADCGKRFAHEYKLKNHITSHHEKNVTAEVVKYTPPSEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAPHNGENEVEASDQDGYGGKRANVKNQKQNKPKPNLKLPPSKISQRKGTTTPSPAPMSAVKKSWPVKEENYEEEDSEETEEEDRENVEEGWRYAENEEDDEETEYED 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6467610 6476071 - Lsi04G007080.1 Lsi04g00708 660757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00708 371 MobiDBLite consensus disorder prediction 201 227 - -
Lsi04g00708 371 PANTHER BNAA03G13270D PROTEIN 4 370 - -
Lsi04g00708 371 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Lsi04g00708 371 SMART c2h2final6 136 160 IPR013087 -
Lsi04g00708 371 SMART c2h2final6 166 190 IPR013087 -
Lsi04g00708 371 SMART c2h2final6 229 254 IPR013087 -
Lsi04g00708 371 SMART c2h2final6 77 101 IPR013087 -
Lsi04g00708 371 SMART c2h2final6 106 130 IPR013087 -
Lsi04g00708 371 Gene3D Classic Zinc Finger 103 133 - -
Lsi04g00708 371 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Lsi04g00708 371 MobiDBLite consensus disorder prediction 356 371 - -
Lsi04g00708 371 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Lsi04g00708 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Lsi04g00708 371 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Lsi04g00708 371 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Lsi04g00708 371 Gene3D Classic Zinc Finger 162 191 - -
Lsi04g00708 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Lsi04g00708 371 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Lsi04g00708 371 MobiDBLite consensus disorder prediction 306 321 - -
Lsi04g00708 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Lsi04g00708 371 Gene3D Classic Zinc Finger 202 271 - -
Lsi04g00708 371 Gene3D Classic Zinc Finger 77 102 - -
Lsi04g00708 371 Gene3D Classic Zinc Finger 134 161 - -
Lsi04g00708 371 MobiDBLite consensus disorder prediction 206 220 - -
Lsi04g00708 371 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Lsi04g00708 371 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Lsi04g00708 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Lsi04g00708 371 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Lsi04g00708 371 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 370 - -
Lsi04g00708 371 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Lsi04g00708 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Lsi04g00708 371 MobiDBLite consensus disorder prediction 256 371 - -
Lsi04g00708 371 MobiDBLite consensus disorder prediction 334 349 - -
Lsi04g00708 371 SUPERFAMILY beta-beta-alpha zinc fingers 160 193 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00020 Lsi-Chr4:286698 Lsi04g00708 Lsi-Chr4:6467610 1.23E-09 dispersed
Lsi04g00708 Lsi-Chr4:6467610 Lsi08g00712 Lsi-Chr8:15451595 1.39E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25149 PF00096 zf-C2H2 0.0045 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00708 - - csv:101218905 662.914