Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g00710 | ATGGAACTTACAGATATGCAGCAAAGCAAGCAGCAGCAGCAGCAACATCATCATCTCCATCATCAAAATCAAACCCAAAACCAAAAACATGGCTCTTCTCAATCACAATCTCCATCCCCATCTCCATCTCCATCTCCTCAGCAGCTTCATGGAGTCCCTTTCGATGCTAGATCACCAGCTTCTGCTGCAGGAGGAGCTCCACCTTTCATGGCTTCCATCTCTTCTCTTGTCTCTCTCCCTCCTCCTCCTTCTTCTTCCAATTCTTCTGCTTCCTCCGTCTCTCTCTCCGCCGCCGCCACTCCTCCTCATCTTGACGCTTCACTCGTCATCGCCACCAGATCCGACACCACCACTACCGATCCTTCTCCCCGATCTACCTCCAACAACAACGCTCTCAAGCGTTCTACCAAAGATCGTCACACCAAAGTCGACGGTCGTGGCCGTCGTATCCGTATGCCGGCCACTTGTGCCGCTAGGGTTTTCCAATTGACTCGTGAATTGGGACATAAGTCTGACGGCGAGACTATCGAGTGGCTTCTCCAGCAAGCCGAACCTGCAATCATCGCCGCCACTGGTACAGGTACAATCCCTGCGAATTTCTCCTCCTTGAACATCTCAATTCGTAGTAGTGGATCCACTCTCTCCGCTCCTCCCTCCAAATCCGCTCCTCATTCCTTTCATGGCGCTTTGGCTCTCGCTCACCATCCCCACGCTTACGAAGAAGGCTTCGCACATGCTGCTCTTTTAGGGTTTCACCACCAACAACAGCAGCAACAGCAACACCAACTCAATTTAATGACCGCCGATCAAATCGGCGACGCCCTACCCAGCGGTAGCGGCGGAGGAGACTCAACCGATAACTATATGAGAAAAAGATTCAGAGAAGACCTGTTTAAAGAAGATACACAATCTCCAGGGGAAAACAGTGGCGGCGCTGGATCTCCGAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACCACCATCAGCGTCTTCATCGGGGCTACTACGGCCTGGGGCGGCGATGTGGGCGGTGGCGGCTCCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACAACAGGTTCCGGCGGGGGAAATGTGGGAAGTTCTTCGGGAGGCGGCGGCGGCGGTGGGGGATTGGAAGCTCATCAGATGTGGCCATTTTCGACAAGTGGAAACACATTGCAGGCACCGTTGCATTTGATGCCAAGATTCAACATCCCTGGAGGTGTGGAAATTCAAGCCGCCGCCGCTGGAGGAGGAAGAGGCGGGGGGCAATTGCAACTGGGTTCAATGTTGATGCAACAAGGCGGTGGTTTGGGAGTATCGGAATCGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTATTCTAGAGGCGGTGGTTTCAATATTAATTCTGATAATCATCCATTGGAGCATCATCCTCACAATACTGATAGCGGAGATGAAGCTCCAAATACTTCACAATGA | 1494 | 52.01 | MELTDMQQSKQQQQQHHHLHHQNQTQNQKHGSSQSQSPSPSPSPSPQQLHGVPFDARSPASAAGGAPPFMASISSLVSLPPPPSSSNSSASSVSLSAAATPPHLDASLVIATRSDTTTTDPSPRSTSNNNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHAYEEGFAHAALLGFHHQQQQQQQHQLNLMTADQIGDALPSGSGGGDSTDNYMRKRFREDLFKEDTQSPGENSGGAGSPKAMKSDLQLEKQQPPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTTGSGGGNVGSSSGGGGGGGGLEAHQMWPFSTSGNTLQAPLHLMPRFNIPGGVEIQAAAAGGGRGGGQLQLGSMLMQQGGGLGVSESNLGMLAALNAAYSRGGGFNINSDNHPLEHHPHNTDSGDEAPNTSQ | 497 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6498851 | 6500344 | + | Lsi04G007100.1 | Lsi04g00710 | 660759 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g00710 | 497 | Pfam | TCP family transcription factor | 135 | 267 | IPR017887 | - | |
Lsi04g00710 | 497 | PANTHER | TRANSCRIPTION FACTOR TCP8 | 31 | 497 | - | - | |
Lsi04g00710 | 497 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 31 | 497 | IPR005333 | GO:0003700 | |
Lsi04g00710 | 497 | MobiDBLite | consensus disorder prediction | 473 | 497 | - | - | |
Lsi04g00710 | 497 | MobiDBLite | consensus disorder prediction | 112 | 149 | - | - | |
Lsi04g00710 | 497 | MobiDBLite | consensus disorder prediction | 112 | 132 | - | - | |
Lsi04g00710 | 497 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Lsi04g00710 | 497 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
Lsi04g00710 | 497 | MobiDBLite | consensus disorder prediction | 297 | 337 | - | - | |
Lsi04g00710 | 497 | MobiDBLite | consensus disorder prediction | 133 | 149 | - | - | |
Lsi04g00710 | 497 | ProSiteProfiles | TCP domain profile. | 136 | 190 | IPR017887 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00060 | Lsi-Chr2:554602 | Lsi04g00710 | Lsi-Chr4:6498851 | 2.82E-44 | dispersed | |
Lsi04g00710 | Lsi-Chr4:6498851 | Lsi06g01472 | Lsi-Chr6:25231360 | 1.84E-40 | dispersed | |
Lsi04g00710 | Lsi-Chr4:6498851 | Lsi04g00434 | Lsi-Chr4:4137810 | 1.72E-47 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25150 | PF03634 | TCP | 6.20E-39 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g00710 | - | - | csv:101222378 | 588.956 |