Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00710 ATGGAACTTACAGATATGCAGCAAAGCAAGCAGCAGCAGCAGCAACATCATCATCTCCATCATCAAAATCAAACCCAAAACCAAAAACATGGCTCTTCTCAATCACAATCTCCATCCCCATCTCCATCTCCATCTCCTCAGCAGCTTCATGGAGTCCCTTTCGATGCTAGATCACCAGCTTCTGCTGCAGGAGGAGCTCCACCTTTCATGGCTTCCATCTCTTCTCTTGTCTCTCTCCCTCCTCCTCCTTCTTCTTCCAATTCTTCTGCTTCCTCCGTCTCTCTCTCCGCCGCCGCCACTCCTCCTCATCTTGACGCTTCACTCGTCATCGCCACCAGATCCGACACCACCACTACCGATCCTTCTCCCCGATCTACCTCCAACAACAACGCTCTCAAGCGTTCTACCAAAGATCGTCACACCAAAGTCGACGGTCGTGGCCGTCGTATCCGTATGCCGGCCACTTGTGCCGCTAGGGTTTTCCAATTGACTCGTGAATTGGGACATAAGTCTGACGGCGAGACTATCGAGTGGCTTCTCCAGCAAGCCGAACCTGCAATCATCGCCGCCACTGGTACAGGTACAATCCCTGCGAATTTCTCCTCCTTGAACATCTCAATTCGTAGTAGTGGATCCACTCTCTCCGCTCCTCCCTCCAAATCCGCTCCTCATTCCTTTCATGGCGCTTTGGCTCTCGCTCACCATCCCCACGCTTACGAAGAAGGCTTCGCACATGCTGCTCTTTTAGGGTTTCACCACCAACAACAGCAGCAACAGCAACACCAACTCAATTTAATGACCGCCGATCAAATCGGCGACGCCCTACCCAGCGGTAGCGGCGGAGGAGACTCAACCGATAACTATATGAGAAAAAGATTCAGAGAAGACCTGTTTAAAGAAGATACACAATCTCCAGGGGAAAACAGTGGCGGCGCTGGATCTCCGAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACCACCATCAGCGTCTTCATCGGGGCTACTACGGCCTGGGGCGGCGATGTGGGCGGTGGCGGCTCCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACAACAGGTTCCGGCGGGGGAAATGTGGGAAGTTCTTCGGGAGGCGGCGGCGGCGGTGGGGGATTGGAAGCTCATCAGATGTGGCCATTTTCGACAAGTGGAAACACATTGCAGGCACCGTTGCATTTGATGCCAAGATTCAACATCCCTGGAGGTGTGGAAATTCAAGCCGCCGCCGCTGGAGGAGGAAGAGGCGGGGGGCAATTGCAACTGGGTTCAATGTTGATGCAACAAGGCGGTGGTTTGGGAGTATCGGAATCGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTATTCTAGAGGCGGTGGTTTCAATATTAATTCTGATAATCATCCATTGGAGCATCATCCTCACAATACTGATAGCGGAGATGAAGCTCCAAATACTTCACAATGA 1494 52.01 MELTDMQQSKQQQQQHHHLHHQNQTQNQKHGSSQSQSPSPSPSPSPQQLHGVPFDARSPASAAGGAPPFMASISSLVSLPPPPSSSNSSASSVSLSAAATPPHLDASLVIATRSDTTTTDPSPRSTSNNNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHAYEEGFAHAALLGFHHQQQQQQQHQLNLMTADQIGDALPSGSGGGDSTDNYMRKRFREDLFKEDTQSPGENSGGAGSPKAMKSDLQLEKQQPPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTTGSGGGNVGSSSGGGGGGGGLEAHQMWPFSTSGNTLQAPLHLMPRFNIPGGVEIQAAAAGGGRGGGQLQLGSMLMQQGGGLGVSESNLGMLAALNAAYSRGGGFNINSDNHPLEHHPHNTDSGDEAPNTSQ 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6498851 6500344 + Lsi04G007100.1 Lsi04g00710 660759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00710 497 Pfam TCP family transcription factor 135 267 IPR017887 -
Lsi04g00710 497 PANTHER TRANSCRIPTION FACTOR TCP8 31 497 - -
Lsi04g00710 497 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 31 497 IPR005333 GO:0003700
Lsi04g00710 497 MobiDBLite consensus disorder prediction 473 497 - -
Lsi04g00710 497 MobiDBLite consensus disorder prediction 112 149 - -
Lsi04g00710 497 MobiDBLite consensus disorder prediction 112 132 - -
Lsi04g00710 497 MobiDBLite consensus disorder prediction 1 38 - -
Lsi04g00710 497 MobiDBLite consensus disorder prediction 1 65 - -
Lsi04g00710 497 MobiDBLite consensus disorder prediction 297 337 - -
Lsi04g00710 497 MobiDBLite consensus disorder prediction 133 149 - -
Lsi04g00710 497 ProSiteProfiles TCP domain profile. 136 190 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00710 - - - csv:101222378 588.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00060 Lsi-Chr2:554602 Lsi04g00710 Lsi-Chr4:6498851 2.82E-44 dispersed
Lsi04g00710 Lsi-Chr4:6498851 Lsi06g01472 Lsi-Chr6:25231360 1.84E-40 dispersed
Lsi04g00710 Lsi-Chr4:6498851 Lsi04g00434 Lsi-Chr4:4137810 1.72E-47 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00863 . 50 270 TCP Transcription Factor Family AT5G23280 64.0 1.7e-66 249.6
Lsi04g00792 . 37 258 TCP Transcription Factor Family AT5G23280 60.3 1.6e-61 233.0
Lsi09g01921 . 59 337 TCP Transcription Factor Family AT2G45680 54.1 2.0e-65 246.5
Lsi04g00434 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.2e-41 165.2
Lsi02g00060 CCT,ECH 17 115 TCP Transcription Factor Family AT3G47620 83.8 2.7e-39 160.2
Lsi04g00710 . 135 217 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Lsi04g00710 . 135 227 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Lsi07g01491 . 48 315 TCP Transcription Factor Family AT3G27010 56.9 1.5e-59 226.9
Lsi09g00863 . 46 269 TCP Transcription Factor Family AT5G08330 62.1 1.2e-64 243.4
Lsi04g00792 . 9 256 TCP Transcription Factor Family AT5G08330 56.0 8.4e-63 237.3
Lsi04g00710 . 134 365 TCP Transcription Factor Family AT1G35560 50.4 4.7e-43 172.2
Lsi06g01407 . 32 134 TCP Transcription Factor Family AT5G60970 74.0 8.8e-40 161.4
Lsi07g00939 . 32 138 TCP Transcription Factor Family AT3G02150 69.9 2.4e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25150 PF03634 TCP 6.20E-39 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00710 Lsi_Chr04 FPKM 10.16358 11.310304 14.495985 14.968977 11.378228 13.401944 15.222516 19.094984 16.343184 14.646894