Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00710 ATGGAACTTACAGATATGCAGCAAAGCAAGCAGCAGCAGCAGCAACATCATCATCTCCATCATCAAAATCAAACCCAAAACCAAAAACATGGCTCTTCTCAATCACAATCTCCATCCCCATCTCCATCTCCATCTCCTCAGCAGCTTCATGGAGTCCCTTTCGATGCTAGATCACCAGCTTCTGCTGCAGGAGGAGCTCCACCTTTCATGGCTTCCATCTCTTCTCTTGTCTCTCTCCCTCCTCCTCCTTCTTCTTCCAATTCTTCTGCTTCCTCCGTCTCTCTCTCCGCCGCCGCCACTCCTCCTCATCTTGACGCTTCACTCGTCATCGCCACCAGATCCGACACCACCACTACCGATCCTTCTCCCCGATCTACCTCCAACAACAACGCTCTCAAGCGTTCTACCAAAGATCGTCACACCAAAGTCGACGGTCGTGGCCGTCGTATCCGTATGCCGGCCACTTGTGCCGCTAGGGTTTTCCAATTGACTCGTGAATTGGGACATAAGTCTGACGGCGAGACTATCGAGTGGCTTCTCCAGCAAGCCGAACCTGCAATCATCGCCGCCACTGGTACAGGTACAATCCCTGCGAATTTCTCCTCCTTGAACATCTCAATTCGTAGTAGTGGATCCACTCTCTCCGCTCCTCCCTCCAAATCCGCTCCTCATTCCTTTCATGGCGCTTTGGCTCTCGCTCACCATCCCCACGCTTACGAAGAAGGCTTCGCACATGCTGCTCTTTTAGGGTTTCACCACCAACAACAGCAGCAACAGCAACACCAACTCAATTTAATGACCGCCGATCAAATCGGCGACGCCCTACCCAGCGGTAGCGGCGGAGGAGACTCAACCGATAACTATATGAGAAAAAGATTCAGAGAAGACCTGTTTAAAGAAGATACACAATCTCCAGGGGAAAACAGTGGCGGCGCTGGATCTCCGAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACCACCATCAGCGTCTTCATCGGGGCTACTACGGCCTGGGGCGGCGATGTGGGCGGTGGCGGCTCCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACAACAGGTTCCGGCGGGGGAAATGTGGGAAGTTCTTCGGGAGGCGGCGGCGGCGGTGGGGGATTGGAAGCTCATCAGATGTGGCCATTTTCGACAAGTGGAAACACATTGCAGGCACCGTTGCATTTGATGCCAAGATTCAACATCCCTGGAGGTGTGGAAATTCAAGCCGCCGCCGCTGGAGGAGGAAGAGGCGGGGGGCAATTGCAACTGGGTTCAATGTTGATGCAACAAGGCGGTGGTTTGGGAGTATCGGAATCGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTATTCTAGAGGCGGTGGTTTCAATATTAATTCTGATAATCATCCATTGGAGCATCATCCTCACAATACTGATAGCGGAGATGAAGCTCCAAATACTTCACAATGA 1494 52.01 MELTDMQQSKQQQQQHHHLHHQNQTQNQKHGSSQSQSPSPSPSPSPQQLHGVPFDARSPASAAGGAPPFMASISSLVSLPPPPSSSNSSASSVSLSAAATPPHLDASLVIATRSDTTTTDPSPRSTSNNNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHAYEEGFAHAALLGFHHQQQQQQQHQLNLMTADQIGDALPSGSGGGDSTDNYMRKRFREDLFKEDTQSPGENSGGAGSPKAMKSDLQLEKQQPPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTTGSGGGNVGSSSGGGGGGGGLEAHQMWPFSTSGNTLQAPLHLMPRFNIPGGVEIQAAAAGGGRGGGQLQLGSMLMQQGGGLGVSESNLGMLAALNAAYSRGGGFNINSDNHPLEHHPHNTDSGDEAPNTSQ 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6498851 6500344 + Lsi04G007100.1 Lsi04g00710 660759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00710 497 Pfam TCP family transcription factor 135 267 IPR017887 -
Lsi04g00710 497 PANTHER TRANSCRIPTION FACTOR TCP8 31 497 - -
Lsi04g00710 497 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 31 497 IPR005333 GO:0003700
Lsi04g00710 497 MobiDBLite consensus disorder prediction 473 497 - -
Lsi04g00710 497 MobiDBLite consensus disorder prediction 112 149 - -
Lsi04g00710 497 MobiDBLite consensus disorder prediction 112 132 - -
Lsi04g00710 497 MobiDBLite consensus disorder prediction 1 38 - -
Lsi04g00710 497 MobiDBLite consensus disorder prediction 1 65 - -
Lsi04g00710 497 MobiDBLite consensus disorder prediction 297 337 - -
Lsi04g00710 497 MobiDBLite consensus disorder prediction 133 149 - -
Lsi04g00710 497 ProSiteProfiles TCP domain profile. 136 190 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00060 Lsi-Chr2:554602 Lsi04g00710 Lsi-Chr4:6498851 2.82E-44 dispersed
Lsi04g00710 Lsi-Chr4:6498851 Lsi06g01472 Lsi-Chr6:25231360 1.84E-40 dispersed
Lsi04g00710 Lsi-Chr4:6498851 Lsi04g00434 Lsi-Chr4:4137810 1.72E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25150 PF03634 TCP 6.20E-39 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00710 - - csv:101222378 588.956