Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00730 ATGGCGGCGGTAGGAGGAACCGCCGGTGGAGGCGTTGAGTGGCATGTCAGGCCTCCTAACCCTAAAAACCCGATTGTTTTCTTCGACGTCACCATTGGCACTATCCCTGCCGGTCGTATCAAGATGGAGCTATTCGCCGATATTGCTCCAAAAACCGCCGAGAATTTTCGGAAAGCTGGCTTGCCAGTTGGTTATAAGGGGTGCCAATTCCATAGAGTAATCAAGGATTTCATGATTCAAGCCGGTGACTTTGTGAAGGGTGATGGCAGTGGATGTGTTTCTATTTATGGACATAAGTTTGAGGATGAAAATTTTGTTGCTAAACACACTGGACCTGGTTTATTGTCACTGGCAAATAGTGGGCCTGGCACAAATGGATGTCAGTTCTTCATTACTTGTGCCAAATGCGATTGGCTTGACAACAAGCACGTGGTCTTTGGGAGGGTGCTGGGTGACGGCCTTTTGGTTGTCAGGAAGATTGAAAATGTAGCTACTGGCCCTAATAACCGACCAAAGTTGGCCTGTGTTATTGCTGAATGTGGTGAAATGTAA 552 47.28 MAAVGGTAGGGVEWHVRPPNPKNPIVFFDVTIGTIPAGRIKMELFADIAPKTAENFRKAGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGHKFEDENFVAKHTGPGLLSLANSGPGTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6731941 6736889 + Lsi04G007300.1 Lsi04g00730 660779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00730 183 PIRSF Peptidylpro_ismrse 14 183 IPR024936 GO:0003755
Lsi04g00730 183 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 70 82 IPR002130 GO:0000413|GO:0003755
Lsi04g00730 183 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Lsi04g00730 183 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 44 59 IPR002130 GO:0000413|GO:0003755
Lsi04g00730 183 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 128 140 IPR002130 GO:0000413|GO:0003755
Lsi04g00730 183 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 141 156 IPR002130 GO:0000413|GO:0003755
Lsi04g00730 183 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H 20 183 - -
Lsi04g00730 183 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 28 181 IPR002130 GO:0000413|GO:0003755
Lsi04g00730 183 Gene3D - 13 183 IPR029000 -
Lsi04g00730 183 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 27 182 IPR002130 GO:0000413|GO:0003755
Lsi04g00730 183 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 20 183 - -
Lsi04g00730 183 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 65 82 IPR020892 GO:0003755|GO:0006457
Lsi04g00730 183 SUPERFAMILY Cyclophilin-like 14 183 IPR029000 -
Lsi04g00730 183 CDD cyclophilin_ABH_like 24 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00730 K09567 PPIH, CYPH; peptidyl-prolyl isomerase H (cyclophilin H) [EC:5.2.1.8] - csv:101220045 374.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g00730 Lsi09g01747 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00730 Lsi-Chr4:6731941 Lsi11g01182 Lsi-Chr11:20307474 1.23E-64 dispersed
Lsi04g01412 Lsi-Chr4:21886571 Lsi04g00730 Lsi-Chr4:6731941 9.70E-25 dispersed
Lsi04g00730 Lsi-Chr4:6731941 Lsi11g01025 Lsi-Chr11:17432350 8.47E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1302 . . . . . . . Bma15g00278 . . . . . . . . . . . . . . . . Cla06g00178 Cam06g0033 Cec06g0197 Cco06g0192 Clacu06g0194 Cmu06g0188 Cre06g0960 . . . . Lsi04g00730 . Chy11g01811 Cme11g02344 Blo06g00788 Blo12g00285 . . . . . . Sed09g0360 . . . . . . . . Bhi12g02419 Tan06g1479 Cmetu11g1517 . Hepe03g1142 . . . . . . . . . Lsi09g01747 . . .
Vvi13g974 . . . . . . Bma03g00416 . . . . . . . . . Cpe09g00456 . . . . . . . . . . . . . . Cone1ag1506 Cone5ag0498 . . . . . . . . . . . . . . . Cmo04g02281 . . . . . . . . . . . . . . . . . . . . . Lsi04g00730 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012263 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00730 Lsi_Chr04 FPKM 2.564228 2.13942 1.850394 2.018946 3.528176 2.927095 2.805482 7.689649 7.103735 6.801437