Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00789 | ATGGAAGCACTAGATGTCGTCCACATCAGCAAAGAAGATCAGCACAGTGTATTTGCAATGCTTGCTGCTGTTCTATGGCTAGGAAATGTTTCCTTTAGTGTTATAGACAATGAGAATCATGTGGAGGCTGTGGAAGATGAAGGTTTACAGACTGTTGCTAAACTGATTGAGTGTGAGATTGAGGAGCTTAAACTAGCTTTATCAACTCGAAAAATGAGAGTTGGGAATGACAGCATTGTCCAAAAGCTTACTTTATCTCAGGCAATTGTCACAAGAGATGCATTGGCAAAGTCAATTTATGCTTGTTTGTTTGAGTGGCTGGTCGAACAAATTAACAAATCTCTTGCTGTAGGCAAACGACGCACTGGCAGATCCATCAGCATTCTTGATATTTATGGCTTTGAATCATTTGATAGGAATAGTTTTGAACAGTTCTGTATTAACTATGCAAACGAGAGACTACAGCAGCATTTCAATCGTCATTTATTTAAGCTAGAGCAGGAGGAATATGTTCAAGACGGCATCGATTGGGCGAAAGTTGATTTTGATGACAACCAAGATTGTCTTAGTCTGTTTGAAAAGAAACCTTTGGGATTGTTGTCCCTGTTAGATGAGGAGTCTACTTTTCCAAATGGGACAGATCTGACTTTCGCGAACAAGCTTAAGCAGCATTTGGGTCCTAATTCTTCTTTTAAAGGAGAACGAGGGAAAGGCTTCACTGTCTATCATTATGCAGGAGAGGTCACTTATGACACAACTGGTTTTCTGGAGAAAAACAGGGACTTGCTACATTTAGATTCGATTCAACTCCTATCCTCATGCTCATGCCATCTCCCTCAGATTTTTGCATCCAACATGCTAACTCAATCGGAAAAATCCATAGGCGGCACTTTACACAAGTCTGGTGGTGCAGAATCCCAAAAACTAAGTGTTGCAAGAAAGTTTAAGGGTCAATTATTCCAATTGATGCTCCGTCTTGAAAATACAACACCCCATTTCATCCGTTGCATCAAGCCCAACAACGTTCAGTCTCCCAGATTGTATGAGCAAGGACTTGTATTACAACAGTTAAGATGTTGTGGGGTCCTAGAAGTGGTACGAATATCACGAGCTGGTTTTCCTACCCGGATGTCACATCAGAAATTTGCTAGAAGGTATGGTTTCCTTCTACAAGAAAGCATTGCATCACAGGATCCCCTAAGTGTCTCAGTTGCAATTCTTCATCAATTCAATATATTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGGCAGGTAAAACTTTTGTTGCTTATATTGTGCAGTTGCTATTTTCCTCGGATTGGAGTGCTTGAAGATACAAGAAACCGCACCCTCCATGGGATTCTCTCTGTTCAAAGCTGTTATAGAGGGCACCTAGCTCGACGCCACCTCAAAGAGCTGAAGAGAGGGATTTCCGTACTTCAGTCATTTGCACGTGGGGAGAAAGCAAGAAAAGAATATGCAATCTTGATACAAAGGCATAGGGCTGCTATTTCAATTCAAAAGTGTGTGAAAGCCAGAATTGCTAGTAAACGTTTGAAGAAAGAGGCAGCCACTACAGACTACAGTTCTCGATTGTTACAAAACAATGTTCAATTATCCGAGATAACTTTAGTGTGCATGTCCACTTTTAAGCCCTTGAATTACAGTTTCTTTGTTTATCCGTGGCTGGTTGGTCAGGAGATGCTCAGGGGATATAGGATTAATGAAACCTGGTGGCCTGACGTTAGTCTTACTGTCTTAGTGTTGAAGCTATCTATTACTATACAAGGAAATAATCTCCCTTCTTTTAATCACGCAAATGGGTCAGGTGAGGTGCTTGTTAAGTCATCATTCCTTGCAGAATTACAACGCCGTGTCTTGAAGGCAGAGGCTGCTTTGCGAGAGAAAGAAGAGGAAAACGACATCCTCCATCAACGTCTCCAACAGTACGAGAACCGTTGGTCAGAGTATGAGCTGAAAATGAAGTCAATGGAAGAGGTGTGGCAGAGACAAATGAGATCCCTGCAGTCTAGCCTCTCCATTGCAAAGAAAAGCTTAGCAGTTGATGATTCAGAGAGAAATTCTGATGCATCAGTGAATGCAAGTGATGACAGAGGAGGATACAGTTGGGAAGTGGGTAGCAACAACACAGCCAATGAAAGCAATGGAGTAAGACCAATGAATGCAGGTCTCAGTGTCATTAGCCGATTGGCCGAAGAATTCGAACAAAGAAGTCAAGTCTTTGGCGACGATGCAAAGTTCTTGGTAGAGGTAAAATCCGGTCAAGTTGAGGCAAGTCTTGACCCAGATAGGGAACTTAGAAGGTTGAAGCAAATGTTTGAAGCATGGAAGAAAGATTACGGGGGAAGGCTGCGTGAAACAAAAGTGATTTTGAATAAGCTTGGGAATGAAGGTGCCATGGATAGGGTGAAAAAGAAATGGTGGGGAAGGAGGAACAGCACAAGGTATAGTTAA | 2493 | 41.88 | MEALDVVHISKEDQHSVFAMLAAVLWLGNVSFSVIDNENHVEAVEDEGLQTVAKLIECEIEELKLALSTRKMRVGNDSIVQKLTLSQAIVTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYVQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLGPNSSFKGERGKGFTVYHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLTQSEKSIGGTLHKSGGAESQKLSVARKFKGQLFQLMLRLENTTPHFIRCIKPNNVQSPRLYEQGLVLQQLRCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQESIASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQVKLLLLILCSCYFPRIGVLEDTRNRTLHGILSVQSCYRGHLARRHLKELKRGISVLQSFARGEKARKEYAILIQRHRAAISIQKCVKARIASKRLKKEAATTDYSSRLLQNNVQLSEITLVCMSTFKPLNYSFFVYPWLVGQEMLRGYRINETWWPDVSLTVLVLKLSITIQGNNLPSFNHANGSGEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQRQMRSLQSSLSIAKKSLAVDDSERNSDASVNASDDRGGYSWEVGSNNTANESNGVRPMNAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYGGRLRETKVILNKLGNEGAMDRVKKKWWGRRNSTRYS | 830 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 7408733 | 7416344 | - | Lsi04G007890.1 | Lsi04g00789 | 660838 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00789 | 830 | Gene3D | - | 135 | 329 | - | - | |
| Lsi04g00789 | 830 | PRINTS | Myosin heavy chain signature | 178 | 206 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g00789 | 830 | PRINTS | Myosin heavy chain signature | 125 | 153 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g00789 | 830 | Gene3D | - | 460 | 508 | - | - | |
| Lsi04g00789 | 830 | Gene3D | Kinesin motor domain | 120 | 368 | IPR036961 | - | |
| Lsi04g00789 | 830 | PANTHER | MYOSIN | 1 | 526 | - | - | |
| Lsi04g00789 | 830 | PANTHER | MYOSIN | 612 | 828 | - | - | |
| Lsi04g00789 | 830 | Coils | Coil | 625 | 673 | - | - | |
| Lsi04g00789 | 830 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 10 | 307 | - | - | |
| Lsi04g00789 | 830 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 2 | 508 | IPR027417 | - | |
| Lsi04g00789 | 830 | SMART | iq_5 | 504 | 526 | IPR000048 | GO:0005515 | |
| Lsi04g00789 | 830 | SMART | iq_5 | 455 | 477 | IPR000048 | GO:0005515 | |
| Lsi04g00789 | 830 | SMART | iq_5 | 478 | 500 | IPR000048 | GO:0005515 | |
| Lsi04g00789 | 830 | ProSiteProfiles | IQ motif profile. | 479 | 508 | IPR000048 | GO:0005515 | |
| Lsi04g00789 | 830 | PANTHER | P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN | 612 | 828 | - | - | |
| Lsi04g00789 | 830 | SMART | MYSc_2a | 1 | 440 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g00789 | 830 | ProSiteProfiles | Myosin motor domain profile. | 1 | 439 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g00789 | 830 | PANTHER | P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN | 1 | 526 | - | - | |
| Lsi04g00789 | 830 | Pfam | IQ calmodulin-binding motif | 461 | 477 | IPR000048 | GO:0005515 | |
| Lsi04g00789 | 830 | Pfam | IQ calmodulin-binding motif | 481 | 499 | IPR000048 | GO:0005515 | |
| Lsi04g00789 | 830 | Pfam | Myosin head (motor domain) | 2 | 427 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi04g00789 | 830 | Gene3D | - | 373 | 437 | - | - | |
| Lsi04g00789 | 830 | ProSiteProfiles | IQ motif profile. | 458 | 484 | IPR000048 | GO:0005515 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00789 | Lsi-Chr4:7408733 | Lsi04g01280 | Lsi-Chr4:20201696 | 0 | dispersed | |
| Lsi04g00789 | Lsi-Chr4:7408733 | Lsi09g01808 | Lsi-Chr9:26861807 | 2.79E-104 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00789 | - | K10357 | csv:101222101 | 1351.27 |