Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00790 ATGTCTCGGAAATCCCAGGTGATGGTTTCATTGCAATCCACCAAATCCATGCCAGTTAATTCTCGGTTCATGATTTCACAAACTGCTGAAACTATGGAAGAGCCGTATAATCGGAATGCGAAAGACATGGAAGCTAATTCGATTGTTGATGGTGAAAATGGTGCTGCTGGAGATGATGCCGTCAATCGACTTCAATACAGTATGAACAATATTGATGAGCTGAATGAGGACTCACCATACAATTACAATATCACAACAGTGGAAGAAAGACCCACCATGGATGATGGAGAAGATGGTTTTATGCCTTTACCTTCACCTTCAGTATCGGCTTCACATACCGAACGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACTTCAGTCTTGGTTTAAACTTCCAAATGGGAATTGGGATCTTGTAAAGATACTATCAACGGCAGGAACAGAGTCAATAGTTTCACTGACGGATGGAAAGGTGTTAAAGGTGAAAGCTGAAAATTTGATTCCTGCAAATCCGGATATTCTTGATGGTGTTGATGATCTTATGCAACTTAGCTATTTAAATGAGCCTTCAGTATTATATGATCTTGAGTACAGATATAATCAAGATATTATATATACAAAAGCAGGGCCAGTTCTGGTTGCTATCAATCCTTTTAAGAAAGTTGATTTGTATGGAAACGATTACATTGACGCATACAAGCGCAAAACAGTTGATAGCCCACACGTATATGCCATTACCGATACAGCCATAAGAGAGATGATTCGAGGTTTTCTGATGCCCTTGATATTTTATTAG 807 39.9 MSRKSQVMVSLQSTKSMPVNSRFMISQTAETMEEPYNRNAKDMEANSIVDGENGAAGDDAVNRLQYSMNNIDELNEDSPYNYNITTVEERPTMDDGEDGFMPLPSPSVSASHTERRWGDTSSYTPRKILQSWFKLPNGNWDLVKILSTAGTESIVSLTDGKVLKVKAENLIPANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIDAYKRKTVDSPHVYAITDTAIREMIRGFLMPLIFY 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7418949 7422553 - Lsi04G007900.1 Lsi04g00790 660839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00790 268 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lsi04g00790 268 PANTHER MYOSIN-3 12 262 - -
Lsi04g00790 268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 259 IPR027417 -
Lsi04g00790 268 Gene3D Kinesin motor domain 131 261 IPR036961 -
Lsi04g00790 268 ProSiteProfiles Myosin motor domain profile. 179 268 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi04g00790 268 PANTHER MYOSIN 12 262 - -
Lsi04g00790 268 Pfam Myosin head (motor domain) 181 258 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00790 - - K10357 csv:101222101 484.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00790 Lsi-Chr4:7418949 Lsi04g01280 Lsi-Chr4:20201696 4.18E-44 dispersed
Lsi04g00790 Lsi-Chr4:7418949 Lsi09g01808 Lsi-Chr9:26861807 2.09E-18 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g01280 . 1 1214 Myosins gene family AT5G54280 54.3 0.0e+00 1207.2
Lsi04g00789 . 1 824 Myosins gene family AT5G54280 50.4 3.4e-213 739.2
Lsi04g00790 . 114 259 Myosins gene family AT5G54280 56.8 1.4e-44 179.1
Lsi04g00789 . 2 829 Myosins gene family AT1G50360 71.3 0.0e+00 1097.8
Lsi04g00790 . 6 259 Myosins gene family AT1G50360 53.5 8.9e-70 262.7
Lsi06g00306 . 1 1596 Myosins gene family AT1G17580 70.1 0.0e+00 1932.5
Lsi11g00416 . 481 2009 Myosins gene family AT1G17580 64.9 0.0e+00 1723.4
Lsi02g02634 . 1 1580 Myosins gene family AT1G17580 62.8 0.0e+00 1704.9
Lsi09g01808 . 7 1473 Myosins gene family AT1G17580 61.5 0.0e+00 1585.5
Lsi08g00830 . 6 1501 Myosins gene family AT1G17580 55.4 0.0e+00 1430.6
Lsi02g02171 . 185 931 Myosins gene family AT1G17580 60.0 3.0e-267 919.1
Lsi09g01808 . 9 1472 Myosins gene family AT5G43900 74.8 0.0e+00 1947.9
Lsi05g01786 . 179 1701 Myosins gene family AT5G43900 58.6 0.0e+00 1656.7
Lsi06g00306 . 6 1596 Myosins gene family AT5G43900 61.2 0.0e+00 1640.9
Lsi02g02634 . 6 1563 Myosins gene family AT5G43900 62.1 0.0e+00 1632.8
Lsi11g00416 . 486 2004 Myosins gene family AT5G43900 62.2 0.0e+00 1594.3
Lsi08g00830 . 6 1501 Myosins gene family AT5G43900 53.5 0.0e+00 1372.5
Lsi02g02171 . 190 931 Myosins gene family AT5G43900 58.3 1.5e-261 900.2
Lsi09g01808 . 1 1473 Myosins gene family AT1G04600 59.3 0.0e+00 1629.4
Lsi06g00306 . 1 1596 Myosins gene family AT1G04600 53.4 0.0e+00 1458.7
Lsi02g02634 . 1 1547 Myosins gene family AT1G04600 52.0 0.0e+00 1439.5
Lsi11g00416 . 481 2004 Myosins gene family AT1G04600 52.6 0.0e+00 1384.0
Lsi02g02171 . 185 931 Myosins gene family AT1G04600 58.1 4.8e-261 898.7
Lsi09g01808 . 1 1363 Myosins gene family AT1G04160 71.4 0.0e+00 1751.9
Lsi05g01786 . 179 1652 Myosins gene family AT1G04160 59.1 0.0e+00 1635.9
Lsi02g02634 . 6 1466 Myosins gene family AT1G04160 63.0 0.0e+00 1563.5
Lsi06g00306 . 1 1523 Myosins gene family AT1G04160 61.2 0.0e+00 1562.7
Lsi11g00416 . 486 1896 Myosins gene family AT1G04160 61.4 0.0e+00 1469.1
Lsi08g00830 . 6 1402 Myosins gene family AT1G04160 54.6 0.0e+00 1296.6
Lsi02g02171 . 190 931 Myosins gene family AT1G04160 58.4 1.3e-261 900.2
Lsi11g00416 . 481 2006 Myosins gene family AT1G08730 84.2 0.0e+00 2182.9
Lsi06g00306 . 1 1596 Myosins gene family AT1G08730 70.6 0.0e+00 1925.6
Lsi02g02634 . 1 1578 Myosins gene family AT1G08730 64.6 0.0e+00 1749.6
Lsi09g01808 . 1 1471 Myosins gene family AT1G08730 64.9 0.0e+00 1665.6
Lsi05g01786 . 179 1701 Myosins gene family AT1G08730 52.5 0.0e+00 1489.2
Lsi08g00830 . 6 1503 Myosins gene family AT1G08730 57.0 0.0e+00 1463.4
Lsi02g02171 . 185 931 Myosins gene family AT1G08730 65.6 3.3e-298 1021.9
Lsi09g01808 . 7 1473 Myosins gene family AT2G33240 56.2 0.0e+00 1557.3
Lsi06g00306 . 5 1596 Myosins gene family AT2G33240 51.8 0.0e+00 1397.1
Lsi11g00416 . 485 2004 Myosins gene family AT2G33240 52.4 0.0e+00 1358.2
Lsi02g02171 . 189 931 Myosins gene family AT2G33240 57.5 1.8e-255 880.2
Lsi11g00416 . 481 2009 Myosins gene family AT1G54560 84.8 0.0e+00 2178.3
Lsi06g00306 . 1 1596 Myosins gene family AT1G54560 70.2 0.0e+00 1909.4
Lsi02g02634 . 1 1578 Myosins gene family AT1G54560 63.4 0.0e+00 1714.9
Lsi09g01808 . 1 1471 Myosins gene family AT1G54560 64.4 0.0e+00 1644.4
Lsi08g00830 . 6 1503 Myosins gene family AT1G54560 57.1 0.0e+00 1463.7
Lsi05g01786 . 179 1701 Myosins gene family AT1G54560 51.3 0.0e+00 1453.0
Lsi02g02171 . 185 931 Myosins gene family AT1G54560 65.5 7.9e-300 1027.3
Lsi02g02634 . 131 1583 Myosins gene family AT2G31900 76.4 0.0e+00 1968.4
Lsi06g00306 . 116 1596 Myosins gene family AT2G31900 59.4 0.0e+00 1479.9
Lsi11g00416 . 596 2004 Myosins gene family AT2G31900 59.4 0.0e+00 1430.6
Lsi09g01808 . 116 1473 Myosins gene family AT2G31900 58.7 0.0e+00 1401.0
Lsi08g00830 . 113 1495 Myosins gene family AT2G31900 52.5 0.0e+00 1243.0
Lsi02g02171 . 342 931 Myosins gene family AT2G31900 64.0 5.5e-234 808.5
Lsi09g01808 . 1 1472 Myosins gene family AT2G20290 64.4 0.0e+00 1681.4
Lsi05g01786 . 185 1670 Myosins gene family AT2G20290 55.8 0.0e+00 1522.3
Lsi06g00306 . 7 1594 Myosins gene family AT2G20290 53.8 0.0e+00 1436.4
Lsi02g02634 . 7 1577 Myosins gene family AT2G20290 54.4 0.0e+00 1429.5
Lsi11g00416 . 487 2004 Myosins gene family AT2G20290 56.2 0.0e+00 1414.1
Lsi02g02171 . 191 931 Myosins gene family AT2G20290 55.9 8.3e-246 847.8
Lsi09g01808 . 1 1471 Myosins gene family AT4G28710 71.0 0.0e+00 1853.6
Lsi05g01786 . 185 1701 Myosins gene family AT4G28710 56.8 0.0e+00 1601.6
Lsi06g00306 . 9 1596 Myosins gene family AT4G28710 58.7 0.0e+00 1593.2
Lsi02g02634 . 3 1578 Myosins gene family AT4G28710 60.8 0.0e+00 1587.0
Lsi11g00416 . 483 2005 Myosins gene family AT4G28710 62.8 0.0e+00 1573.1
Lsi08g00830 . 6 1483 Myosins gene family AT4G28710 52.7 0.0e+00 1331.2
Lsi02g02171 . 193 931 Myosins gene family AT4G28710 56.7 4.0e-251 865.5
Lsi08g00830 . 1 1504 Myosins gene family AT4G33200 74.2 0.0e+00 2024.6
Lsi06g00306 . 5 1596 Myosins gene family AT4G33200 53.9 0.0e+00 1379.4
Lsi11g00416 . 481 1997 Myosins gene family AT4G33200 58.0 0.0e+00 1371.7
Lsi02g02634 . 5 1580 Myosins gene family AT4G33200 53.2 0.0e+00 1351.3
Lsi09g01808 . 10 1471 Myosins gene family AT4G33200 55.1 0.0e+00 1323.1
Lsi02g02171 . 189 931 Myosins gene family AT4G33200 52.5 2.3e-227 786.6
Lsi11g00416 . 486 1286 Myosins gene family AT3G58160 73.0 0.0e+00 1200.7
Lsi06g00306 . 6 816 Myosins gene family AT3G58160 71.8 0.0e+00 1180.6
Lsi02g02634 . 6 803 Myosins gene family AT3G58160 70.7 0.0e+00 1138.6
Lsi09g01808 . 6 766 Myosins gene family AT3G58160 70.6 0.0e+00 1097.0
Lsi05g01786 . 184 1013 Myosins gene family AT3G58160 64.7 3.6e-311 1064.7
Lsi02g02171 . 190 931 Myosins gene family AT3G58160 64.7 7.1e-291 997.3
Lsi08g00830 . 7 773 Myosins gene family AT3G58160 61.6 3.4e-277 951.8
Lsi06g00306 . 67 1613 Myosins gene family AT5G20490 75.6 0.0e+00 2025.4
Lsi11g00416 . 547 2009 Myosins gene family AT5G20490 73.7 0.0e+00 1804.3
Lsi02g02634 . 82 1578 Myosins gene family AT5G20490 66.3 0.0e+00 1674.8
Lsi09g01808 . 67 1471 Myosins gene family AT5G20490 65.3 0.0e+00 1583.2
Lsi08g00830 . 64 1503 Myosins gene family AT5G20490 56.5 0.0e+00 1412.9
Lsi05g01786 . 267 1701 Myosins gene family AT5G20490 52.6 0.0e+00 1393.3
Lsi02g02171 . 293 931 Myosins gene family AT5G20490 68.8 3.1e-269 925.6
Lsi04g01280 . 1 1214 Myosins gene family AT5G54280 54.3 0.0e+00 1207.2
Lsi04g00789 . 1 824 Myosins gene family AT5G54280 50.4 3.4e-213 739.2
Lsi04g00790 . 114 259 Myosins gene family AT5G54280 56.8 1.4e-44 179.1
Lsi04g00789 . 2 829 Myosins gene family AT1G50360 71.3 0.0e+00 1097.8
Lsi04g00790 . 6 259 Myosins gene family AT1G50360 53.5 8.9e-70 262.7
Lsi06g00306 . 1 1596 Myosins gene family AT1G17580 70.1 0.0e+00 1932.5
Lsi11g00416 . 481 2009 Myosins gene family AT1G17580 64.9 0.0e+00 1723.4
Lsi02g02634 . 1 1580 Myosins gene family AT1G17580 62.8 0.0e+00 1704.9
Lsi09g01808 . 7 1473 Myosins gene family AT1G17580 61.5 0.0e+00 1585.5
Lsi08g00830 . 6 1501 Myosins gene family AT1G17580 55.4 0.0e+00 1430.6
Lsi02g02171 . 185 931 Myosins gene family AT1G17580 60.0 3.0e-267 919.1
Lsi09g01808 . 9 1472 Myosins gene family AT5G43900 74.8 0.0e+00 1947.9
Lsi05g01786 . 179 1701 Myosins gene family AT5G43900 58.6 0.0e+00 1656.7
Lsi06g00306 . 6 1596 Myosins gene family AT5G43900 61.2 0.0e+00 1640.9
Lsi02g02634 . 6 1563 Myosins gene family AT5G43900 62.1 0.0e+00 1632.8
Lsi11g00416 . 486 2004 Myosins gene family AT5G43900 62.2 0.0e+00 1594.3
Lsi08g00830 . 6 1501 Myosins gene family AT5G43900 53.5 0.0e+00 1372.5
Lsi02g02171 . 190 931 Myosins gene family AT5G43900 58.3 1.5e-261 900.2
Lsi09g01808 . 1 1473 Myosins gene family AT1G04600 59.3 0.0e+00 1629.4
Lsi06g00306 . 1 1596 Myosins gene family AT1G04600 53.4 0.0e+00 1458.7
Lsi02g02634 . 1 1547 Myosins gene family AT1G04600 52.0 0.0e+00 1439.5
Lsi11g00416 . 481 2004 Myosins gene family AT1G04600 52.6 0.0e+00 1384.0
Lsi02g02171 . 185 931 Myosins gene family AT1G04600 58.1 4.8e-261 898.7
Lsi09g01808 . 1 1363 Myosins gene family AT1G04160 71.4 0.0e+00 1751.9
Lsi05g01786 . 179 1652 Myosins gene family AT1G04160 59.1 0.0e+00 1635.9
Lsi02g02634 . 6 1466 Myosins gene family AT1G04160 63.0 0.0e+00 1563.5
Lsi06g00306 . 1 1523 Myosins gene family AT1G04160 61.2 0.0e+00 1562.7
Lsi11g00416 . 486 1896 Myosins gene family AT1G04160 61.4 0.0e+00 1469.1
Lsi08g00830 . 6 1402 Myosins gene family AT1G04160 54.6 0.0e+00 1296.6
Lsi02g02171 . 190 931 Myosins gene family AT1G04160 58.4 1.3e-261 900.2
Lsi11g00416 . 481 2006 Myosins gene family AT1G08730 84.2 0.0e+00 2182.9
Lsi06g00306 . 1 1596 Myosins gene family AT1G08730 70.6 0.0e+00 1925.6
Lsi02g02634 . 1 1578 Myosins gene family AT1G08730 64.6 0.0e+00 1749.6
Lsi09g01808 . 1 1471 Myosins gene family AT1G08730 64.9 0.0e+00 1665.6
Lsi05g01786 . 179 1701 Myosins gene family AT1G08730 52.5 0.0e+00 1489.2
Lsi08g00830 . 6 1503 Myosins gene family AT1G08730 57.0 0.0e+00 1463.4
Lsi02g02171 . 185 931 Myosins gene family AT1G08730 65.6 3.3e-298 1021.9
Lsi09g01808 . 7 1473 Myosins gene family AT2G33240 56.2 0.0e+00 1557.3
Lsi06g00306 . 5 1596 Myosins gene family AT2G33240 51.8 0.0e+00 1397.1
Lsi11g00416 . 485 2004 Myosins gene family AT2G33240 52.4 0.0e+00 1358.2
Lsi02g02171 . 189 931 Myosins gene family AT2G33240 57.5 1.8e-255 880.2
Lsi11g00416 . 481 2009 Myosins gene family AT1G54560 84.8 0.0e+00 2178.3
Lsi06g00306 . 1 1596 Myosins gene family AT1G54560 70.2 0.0e+00 1909.4
Lsi02g02634 . 1 1578 Myosins gene family AT1G54560 63.4 0.0e+00 1714.9
Lsi09g01808 . 1 1471 Myosins gene family AT1G54560 64.4 0.0e+00 1644.4
Lsi08g00830 . 6 1503 Myosins gene family AT1G54560 57.1 0.0e+00 1463.7
Lsi05g01786 . 179 1701 Myosins gene family AT1G54560 51.3 0.0e+00 1453.0
Lsi02g02171 . 185 931 Myosins gene family AT1G54560 65.5 7.9e-300 1027.3
Lsi02g02634 . 131 1583 Myosins gene family AT2G31900 76.4 0.0e+00 1968.4
Lsi06g00306 . 116 1596 Myosins gene family AT2G31900 59.4 0.0e+00 1479.9
Lsi11g00416 . 596 2004 Myosins gene family AT2G31900 59.4 0.0e+00 1430.6
Lsi09g01808 . 116 1473 Myosins gene family AT2G31900 58.7 0.0e+00 1401.0
Lsi08g00830 . 113 1495 Myosins gene family AT2G31900 52.5 0.0e+00 1243.0
Lsi02g02171 . 342 931 Myosins gene family AT2G31900 64.0 5.5e-234 808.5
Lsi09g01808 . 1 1472 Myosins gene family AT2G20290 64.4 0.0e+00 1681.4
Lsi05g01786 . 185 1670 Myosins gene family AT2G20290 55.8 0.0e+00 1522.3
Lsi06g00306 . 7 1594 Myosins gene family AT2G20290 53.8 0.0e+00 1436.4
Lsi02g02634 . 7 1577 Myosins gene family AT2G20290 54.4 0.0e+00 1429.5
Lsi11g00416 . 487 2004 Myosins gene family AT2G20290 56.2 0.0e+00 1414.1
Lsi02g02171 . 191 931 Myosins gene family AT2G20290 55.9 8.3e-246 847.8
Lsi09g01808 . 1 1471 Myosins gene family AT4G28710 71.0 0.0e+00 1853.6
Lsi05g01786 . 185 1701 Myosins gene family AT4G28710 56.8 0.0e+00 1601.6
Lsi06g00306 . 9 1596 Myosins gene family AT4G28710 58.7 0.0e+00 1593.2
Lsi02g02634 . 3 1578 Myosins gene family AT4G28710 60.8 0.0e+00 1587.0
Lsi11g00416 . 483 2005 Myosins gene family AT4G28710 62.8 0.0e+00 1573.1
Lsi08g00830 . 6 1483 Myosins gene family AT4G28710 52.7 0.0e+00 1331.2
Lsi02g02171 . 193 931 Myosins gene family AT4G28710 56.7 4.0e-251 865.5
Lsi08g00830 . 1 1504 Myosins gene family AT4G33200 74.2 0.0e+00 2024.6
Lsi06g00306 . 5 1596 Myosins gene family AT4G33200 53.9 0.0e+00 1379.4
Lsi11g00416 . 481 1997 Myosins gene family AT4G33200 58.0 0.0e+00 1371.7
Lsi02g02634 . 5 1580 Myosins gene family AT4G33200 53.2 0.0e+00 1351.3
Lsi09g01808 . 10 1471 Myosins gene family AT4G33200 55.1 0.0e+00 1323.1
Lsi02g02171 . 189 931 Myosins gene family AT4G33200 52.5 2.3e-227 786.6
Lsi11g00416 . 486 1286 Myosins gene family AT3G58160 73.0 0.0e+00 1200.7
Lsi06g00306 . 6 816 Myosins gene family AT3G58160 71.8 0.0e+00 1180.6
Lsi02g02634 . 6 803 Myosins gene family AT3G58160 70.7 0.0e+00 1138.6
Lsi09g01808 . 6 766 Myosins gene family AT3G58160 70.6 0.0e+00 1097.0
Lsi05g01786 . 184 1013 Myosins gene family AT3G58160 64.7 3.6e-311 1064.7
Lsi02g02171 . 190 931 Myosins gene family AT3G58160 64.7 7.1e-291 997.3
Lsi08g00830 . 7 773 Myosins gene family AT3G58160 61.6 3.4e-277 951.8
Lsi06g00306 . 67 1613 Myosins gene family AT5G20490 75.6 0.0e+00 2025.4
Lsi11g00416 . 547 2009 Myosins gene family AT5G20490 73.7 0.0e+00 1804.3
Lsi02g02634 . 82 1578 Myosins gene family AT5G20490 66.3 0.0e+00 1674.8
Lsi09g01808 . 67 1471 Myosins gene family AT5G20490 65.3 0.0e+00 1583.2
Lsi08g00830 . 64 1503 Myosins gene family AT5G20490 56.5 0.0e+00 1412.9
Lsi05g01786 . 267 1701 Myosins gene family AT5G20490 52.6 0.0e+00 1393.3
Lsi02g02171 . 293 931 Myosins gene family AT5G20490 68.8 3.1e-269 925.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030175 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00790 Lsi_Chr04 FPKM 14.195377 15.969749 22.566383 22.597813 21.961563 18.638977 24.750835 16.609989 17.764917 18.717581