Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00790 ATGTCTCGGAAATCCCAGGTGATGGTTTCATTGCAATCCACCAAATCCATGCCAGTTAATTCTCGGTTCATGATTTCACAAACTGCTGAAACTATGGAAGAGCCGTATAATCGGAATGCGAAAGACATGGAAGCTAATTCGATTGTTGATGGTGAAAATGGTGCTGCTGGAGATGATGCCGTCAATCGACTTCAATACAGTATGAACAATATTGATGAGCTGAATGAGGACTCACCATACAATTACAATATCACAACAGTGGAAGAAAGACCCACCATGGATGATGGAGAAGATGGTTTTATGCCTTTACCTTCACCTTCAGTATCGGCTTCACATACCGAACGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACTTCAGTCTTGGTTTAAACTTCCAAATGGGAATTGGGATCTTGTAAAGATACTATCAACGGCAGGAACAGAGTCAATAGTTTCACTGACGGATGGAAAGGTGTTAAAGGTGAAAGCTGAAAATTTGATTCCTGCAAATCCGGATATTCTTGATGGTGTTGATGATCTTATGCAACTTAGCTATTTAAATGAGCCTTCAGTATTATATGATCTTGAGTACAGATATAATCAAGATATTATATATACAAAAGCAGGGCCAGTTCTGGTTGCTATCAATCCTTTTAAGAAAGTTGATTTGTATGGAAACGATTACATTGACGCATACAAGCGCAAAACAGTTGATAGCCCACACGTATATGCCATTACCGATACAGCCATAAGAGAGATGATTCGAGGTTTTCTGATGCCCTTGATATTTTATTAG 807 39.9 MSRKSQVMVSLQSTKSMPVNSRFMISQTAETMEEPYNRNAKDMEANSIVDGENGAAGDDAVNRLQYSMNNIDELNEDSPYNYNITTVEERPTMDDGEDGFMPLPSPSVSASHTERRWGDTSSYTPRKILQSWFKLPNGNWDLVKILSTAGTESIVSLTDGKVLKVKAENLIPANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIDAYKRKTVDSPHVYAITDTAIREMIRGFLMPLIFY 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7418949 7422553 - Lsi04G007900.1 Lsi04g00790 660839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00790 268 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lsi04g00790 268 PANTHER MYOSIN-3 12 262 - -
Lsi04g00790 268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 259 IPR027417 -
Lsi04g00790 268 Gene3D Kinesin motor domain 131 261 IPR036961 -
Lsi04g00790 268 ProSiteProfiles Myosin motor domain profile. 179 268 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi04g00790 268 PANTHER MYOSIN 12 262 - -
Lsi04g00790 268 Pfam Myosin head (motor domain) 181 258 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00790 Lsi-Chr4:7418949 Lsi04g01280 Lsi-Chr4:20201696 4.18E-44 dispersed
Lsi04g00790 Lsi-Chr4:7418949 Lsi09g01808 Lsi-Chr9:26861807 2.09E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00790 - K10357 csv:101222101 484.182