Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g00790 | ATGTCTCGGAAATCCCAGGTGATGGTTTCATTGCAATCCACCAAATCCATGCCAGTTAATTCTCGGTTCATGATTTCACAAACTGCTGAAACTATGGAAGAGCCGTATAATCGGAATGCGAAAGACATGGAAGCTAATTCGATTGTTGATGGTGAAAATGGTGCTGCTGGAGATGATGCCGTCAATCGACTTCAATACAGTATGAACAATATTGATGAGCTGAATGAGGACTCACCATACAATTACAATATCACAACAGTGGAAGAAAGACCCACCATGGATGATGGAGAAGATGGTTTTATGCCTTTACCTTCACCTTCAGTATCGGCTTCACATACCGAACGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACTTCAGTCTTGGTTTAAACTTCCAAATGGGAATTGGGATCTTGTAAAGATACTATCAACGGCAGGAACAGAGTCAATAGTTTCACTGACGGATGGAAAGGTGTTAAAGGTGAAAGCTGAAAATTTGATTCCTGCAAATCCGGATATTCTTGATGGTGTTGATGATCTTATGCAACTTAGCTATTTAAATGAGCCTTCAGTATTATATGATCTTGAGTACAGATATAATCAAGATATTATATATACAAAAGCAGGGCCAGTTCTGGTTGCTATCAATCCTTTTAAGAAAGTTGATTTGTATGGAAACGATTACATTGACGCATACAAGCGCAAAACAGTTGATAGCCCACACGTATATGCCATTACCGATACAGCCATAAGAGAGATGATTCGAGGTTTTCTGATGCCCTTGATATTTTATTAG | 807 | 39.9 | MSRKSQVMVSLQSTKSMPVNSRFMISQTAETMEEPYNRNAKDMEANSIVDGENGAAGDDAVNRLQYSMNNIDELNEDSPYNYNITTVEERPTMDDGEDGFMPLPSPSVSASHTERRWGDTSSYTPRKILQSWFKLPNGNWDLVKILSTAGTESIVSLTDGKVLKVKAENLIPANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIDAYKRKTVDSPHVYAITDTAIREMIRGFLMPLIFY | 268 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7418949 | 7422553 | - | Lsi04G007900.1 | Lsi04g00790 | 660839 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g00790 | 268 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 126 | 175 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
Lsi04g00790 | 268 | PANTHER | MYOSIN-3 | 12 | 262 | - | - | |
Lsi04g00790 | 268 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 153 | 259 | IPR027417 | - | |
Lsi04g00790 | 268 | Gene3D | Kinesin motor domain | 131 | 261 | IPR036961 | - | |
Lsi04g00790 | 268 | ProSiteProfiles | Myosin motor domain profile. | 179 | 268 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Lsi04g00790 | 268 | PANTHER | MYOSIN | 12 | 262 | - | - | |
Lsi04g00790 | 268 | Pfam | Myosin head (motor domain) | 181 | 258 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00790 | Lsi-Chr4:7418949 | Lsi04g01280 | Lsi-Chr4:20201696 | 4.18E-44 | dispersed | |
Lsi04g00790 | Lsi-Chr4:7418949 | Lsi09g01808 | Lsi-Chr9:26861807 | 2.09E-18 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g00790 | - | K10357 | csv:101222101 | 484.182 |