Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g00792 | ATGTCAAATTCTGATCATACCAGCAACGCCAATGGCGTCTCTAATGGCGCCGCCATCGACACCCACAAGAATCAGCCCTCTTCTAATGGAGCCCTCGTCGTCAAAAAACCCCCTTCTAAGGACCGTCACAGTAAAGTCGACGGCCGTGGACGCCGCATCCGTATGCCCATCATCTGCGCCGCCAGAGTATTTCAGCTGACTCGAGAGCTTGGTCATAAGTCCGACGGCCAAACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCTTCCATTATTGCCGCCACTGGCACTGGTACTACCCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACCACTTCTACTCTCTCCCTCTCTCGCCCTCAAGCTCTCTCCGGTCCCACGCCGTTCATACTCGGCAAGCGCGTCAGGTCCGACGATGATGGCAAAGACGATGGGTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTACGACGGGGCCAGGTGGGTACTGGGCGATTCCTGCAAGGCCCGATTATGGGCAGGTTTGGAGTTTTGCCGCCGCCGCTCCGTCGGAGATGGTGGTTCAATCAGGGGGGATTTCTCAGCAAGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAGGCATCGGCGGCGAGAGTGGGAAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGCGGTGGTGGTTCTGGGCGGCGGGAAGATGACCCTCGCTAA | 777 | 56.76 | MSNSDHTSNANGVSNGAAIDTHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGKDDGLGVGQAVGSIVGTTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQSGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR | 258 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7451543 | 7452319 | - | Lsi04G007920.1 | Lsi04g00792 | 660841 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g00792 | 258 | MobiDBLite | consensus disorder prediction | 36 | 51 | - | - | |
Lsi04g00792 | 258 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Lsi04g00792 | 258 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 1 | 255 | IPR005333 | GO:0003700 | |
Lsi04g00792 | 258 | PANTHER | TRANSCRIPTION FACTOR TCP FAMILY-RELATED | 1 | 255 | - | - | |
Lsi04g00792 | 258 | Pfam | TCP family transcription factor | 39 | 125 | IPR017887 | - | |
Lsi04g00792 | 258 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Lsi04g00792 | 258 | MobiDBLite | consensus disorder prediction | 112 | 136 | - | - | |
Lsi04g00792 | 258 | ProSiteProfiles | TCP domain profile. | 39 | 93 | IPR017887 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00434 | Lsi-Chr4:4137810 | Lsi04g00792 | Lsi-Chr4:7451543 | 1.56E-39 | dispersed | |
Lsi04g00792 | Lsi-Chr4:7451543 | Lsi06g01472 | Lsi-Chr6:25231360 | 1.90E-37 | dispersed | |
Lsi10g01248 | Lsi-Chr10:16720639 | Lsi04g00792 | Lsi-Chr4:7451543 | 6.37E-28 | dispersed | |
Lsi04g00792 | Lsi-Chr4:7451543 | Lsi09g00863 | Lsi-Chr9:9968549 | 3.01E-101 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25155 | PF03634 | TCP | 3.40E-33 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g00792 | K16221 | - | csv:101206050 | 414.461 |