Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00792 ATGTCAAATTCTGATCATACCAGCAACGCCAATGGCGTCTCTAATGGCGCCGCCATCGACACCCACAAGAATCAGCCCTCTTCTAATGGAGCCCTCGTCGTCAAAAAACCCCCTTCTAAGGACCGTCACAGTAAAGTCGACGGCCGTGGACGCCGCATCCGTATGCCCATCATCTGCGCCGCCAGAGTATTTCAGCTGACTCGAGAGCTTGGTCATAAGTCCGACGGCCAAACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCTTCCATTATTGCCGCCACTGGCACTGGTACTACCCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACCACTTCTACTCTCTCCCTCTCTCGCCCTCAAGCTCTCTCCGGTCCCACGCCGTTCATACTCGGCAAGCGCGTCAGGTCCGACGATGATGGCAAAGACGATGGGTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTACGACGGGGCCAGGTGGGTACTGGGCGATTCCTGCAAGGCCCGATTATGGGCAGGTTTGGAGTTTTGCCGCCGCCGCTCCGTCGGAGATGGTGGTTCAATCAGGGGGGATTTCTCAGCAAGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAGGCATCGGCGGCGAGAGTGGGAAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGCGGTGGTGGTTCTGGGCGGCGGGAAGATGACCCTCGCTAA 777 56.76 MSNSDHTSNANGVSNGAAIDTHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGKDDGLGVGQAVGSIVGTTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQSGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7451543 7452319 - Lsi04G007920.1 Lsi04g00792 660841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00792 258 MobiDBLite consensus disorder prediction 36 51 - -
Lsi04g00792 258 MobiDBLite consensus disorder prediction 1 51 - -
Lsi04g00792 258 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 255 IPR005333 GO:0003700
Lsi04g00792 258 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 255 - -
Lsi04g00792 258 Pfam TCP family transcription factor 39 125 IPR017887 -
Lsi04g00792 258 MobiDBLite consensus disorder prediction 1 32 - -
Lsi04g00792 258 MobiDBLite consensus disorder prediction 112 136 - -
Lsi04g00792 258 ProSiteProfiles TCP domain profile. 39 93 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00792 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101206050 414.461
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00434 Lsi-Chr4:4137810 Lsi04g00792 Lsi-Chr4:7451543 1.56E-39 dispersed
Lsi04g00792 Lsi-Chr4:7451543 Lsi06g01472 Lsi-Chr6:25231360 1.90E-37 dispersed
Lsi10g01248 Lsi-Chr10:16720639 Lsi04g00792 Lsi-Chr4:7451543 6.37E-28 dispersed
Lsi04g00792 Lsi-Chr4:7451543 Lsi09g00863 Lsi-Chr9:9968549 3.01E-101 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00863 . 50 270 TCP Transcription Factor Family AT5G23280 64.0 1.7e-66 249.6
Lsi04g00792 . 37 258 TCP Transcription Factor Family AT5G23280 60.3 1.6e-61 233.0
Lsi09g01921 . 59 337 TCP Transcription Factor Family AT2G45680 54.1 2.0e-65 246.5
Lsi04g00434 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.2e-41 165.2
Lsi02g00060 CCT,ECH 17 115 TCP Transcription Factor Family AT3G47620 83.8 2.7e-39 160.2
Lsi04g00710 . 135 217 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Lsi04g00710 . 135 227 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Lsi07g01491 . 48 315 TCP Transcription Factor Family AT3G27010 56.9 1.5e-59 226.9
Lsi09g00863 . 46 269 TCP Transcription Factor Family AT5G08330 62.1 1.2e-64 243.4
Lsi04g00792 . 9 256 TCP Transcription Factor Family AT5G08330 56.0 8.4e-63 237.3
Lsi04g00710 . 134 365 TCP Transcription Factor Family AT1G35560 50.4 4.7e-43 172.2
Lsi06g01407 . 32 134 TCP Transcription Factor Family AT5G60970 74.0 8.8e-40 161.4
Lsi07g00939 . 32 138 TCP Transcription Factor Family AT3G02150 69.9 2.4e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25155 PF03634 TCP 3.40E-33 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00792 Lsi_Chr04 FPKM 53.362087 56.582928 8.011889 8.030929 9.901197 10.331173 9.065568 66.667366 66.297279 63.893898