Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00792 ATGTCAAATTCTGATCATACCAGCAACGCCAATGGCGTCTCTAATGGCGCCGCCATCGACACCCACAAGAATCAGCCCTCTTCTAATGGAGCCCTCGTCGTCAAAAAACCCCCTTCTAAGGACCGTCACAGTAAAGTCGACGGCCGTGGACGCCGCATCCGTATGCCCATCATCTGCGCCGCCAGAGTATTTCAGCTGACTCGAGAGCTTGGTCATAAGTCCGACGGCCAAACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCTTCCATTATTGCCGCCACTGGCACTGGTACTACCCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACCACTTCTACTCTCTCCCTCTCTCGCCCTCAAGCTCTCTCCGGTCCCACGCCGTTCATACTCGGCAAGCGCGTCAGGTCCGACGATGATGGCAAAGACGATGGGTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTACGACGGGGCCAGGTGGGTACTGGGCGATTCCTGCAAGGCCCGATTATGGGCAGGTTTGGAGTTTTGCCGCCGCCGCTCCGTCGGAGATGGTGGTTCAATCAGGGGGGATTTCTCAGCAAGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAGGCATCGGCGGCGAGAGTGGGAAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGCGGTGGTGGTTCTGGGCGGCGGGAAGATGACCCTCGCTAA 777 56.76 MSNSDHTSNANGVSNGAAIDTHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGKDDGLGVGQAVGSIVGTTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQSGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGSGRREDDPR 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7451543 7452319 - Lsi04G007920.1 Lsi04g00792 660841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00792 258 MobiDBLite consensus disorder prediction 36 51 - -
Lsi04g00792 258 MobiDBLite consensus disorder prediction 1 51 - -
Lsi04g00792 258 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 255 IPR005333 GO:0003700
Lsi04g00792 258 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 255 - -
Lsi04g00792 258 Pfam TCP family transcription factor 39 125 IPR017887 -
Lsi04g00792 258 MobiDBLite consensus disorder prediction 1 32 - -
Lsi04g00792 258 MobiDBLite consensus disorder prediction 112 136 - -
Lsi04g00792 258 ProSiteProfiles TCP domain profile. 39 93 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00434 Lsi-Chr4:4137810 Lsi04g00792 Lsi-Chr4:7451543 1.56E-39 dispersed
Lsi04g00792 Lsi-Chr4:7451543 Lsi06g01472 Lsi-Chr6:25231360 1.90E-37 dispersed
Lsi10g01248 Lsi-Chr10:16720639 Lsi04g00792 Lsi-Chr4:7451543 6.37E-28 dispersed
Lsi04g00792 Lsi-Chr4:7451543 Lsi09g00863 Lsi-Chr9:9968549 3.01E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25155 PF03634 TCP 3.40E-33 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00792 K16221 - csv:101206050 414.461