Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00812 ATGGCTTACGTGGCCAAATGTATTAATTCTCCTCCAACTCCGATCAATGTTCCACTTCCAAACCCTTTATCTTTCTCCCCAATGTCTTCTTCCTCCGCCACCACCGCCACCAATTTTGCTTCCCCACCCACTTCTCAACCGTCGTCTCCCCCGCCGCCTGCAGTGGTCCTCAGCCCCTGTGCCGCCTGTAAGATCCTCCGCCGCCGCTGCGTCGAGAAATGCGTTTTGGCTCCATATTTCCCTCCCACTGAGCCTCTTAAATTCACCATTGCCCATAGAGTTTTTGGAGCTAGCAATATCATCAAGTTCTTGCAAGAGCTTCCTGAATCTCAAAGAACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGCCTACGAGATCCAGTTTACGGTAGCGCGGGCGCAATTTGTCAGCTACAAAAGCAAGTGAGCGAGCTGCAAGCTCAACTAGCTAAGGCTAGAGCAGAGGTGGCTAATATGCAGCAACAACAAGCAAACTTATTAGCCTTAATTTGCATGGAAATGAGGCAGTCACCGGAGCCTGTTTGGCCACCGCAATTCGTCGACACCGCATGCTTCCTTGACGATGCCACCCTTAGCTCACCGTGGGAGCCACTCTGGACGTGA 633 51.5 MAYVAKCINSPPTPINVPLPNPLSFSPMSSSSATTATNFASPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWPPQFVDTACFLDDATLSSPWEPLWT 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7712280 7713960 - Lsi04G008120.1 Lsi04g00812 660861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00812 210 Pfam Lateral organ boundaries (LOB) domain 59 156 IPR004883 -
Lsi04g00812 210 Coils Coil 138 172 - -
Lsi04g00812 210 MobiDBLite consensus disorder prediction 28 43 - -
Lsi04g00812 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 41 191 - -
Lsi04g00812 210 ProSiteProfiles LOB domain profile. 58 159 IPR004883 -
Lsi04g00812 210 MobiDBLite consensus disorder prediction 28 52 - -
Lsi04g00812 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 41 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01441 Lsi-Chr2:20075036 Lsi04g00812 Lsi-Chr4:7712280 4.84E-68 dispersed
Lsi04g00812 Lsi-Chr4:7712280 Lsi04g01066 Lsi-Chr4:12673905 4.61E-47 dispersed
Lsi10g01295 Lsi-Chr10:17172135 Lsi04g00812 Lsi-Chr4:7712280 4.20E-74 wgd
Lsi02g01697 Lsi-Chr2:22736296 Lsi04g00812 Lsi-Chr4:7712280 7.03E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25158 PF03195 LOB 1.80E-40 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00812 - - bhj:120081845 332.798